Pairwise Alignments

Query, 331 a.a., tRNA dihydrouridine synthase DusB from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., nifR3 family TIM-barrel protein (RefSeq) from Shewanella loihica PV-4

 Score =  428 bits (1100), Expect = e-124
 Identities = 208/320 (65%), Positives = 257/320 (80%), Gaps = 1/320 (0%)

Query: 10  LKIGNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVH 69
           ++IG YQLKN LIVAPMAGVTD+PFR LCLRYGA +AVSEM+S NP +W T KS+ RM H
Sbjct: 1   MQIGPYQLKNQLIVAPMAGVTDQPFRNLCLRYGAALAVSEMLSSNPEVWDTDKSRQRMAH 60

Query: 70  EGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDV 129
            GE GIRSVQIAG+DP +MA AA  +V+ GAQIIDINMGCPAKKVNKKLAGSALL+ P++
Sbjct: 61  AGEDGIRSVQIAGADPDMMAHAALVNVQQGAQIIDINMGCPAKKVNKKLAGSALLQQPEL 120

Query: 130 IEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKGE 189
           ++ IL+AVV AV+VPVTLK RTGW  +++N + IAQ+A+DCGI +LA+HGRTR CMYKG+
Sbjct: 121 VKAILQAVVAAVDVPVTLKIRTGWAPEHRNGVHIAQIAQDCGIASLAVHGRTRQCMYKGD 180

Query: 190 AEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEIQHF 249
           AEYD+I+A+K  VSIPV+ANGDI +PEKAR VL+YTGADA+MIGR AQGRPW+F+EIQH+
Sbjct: 181 AEYDTIRAIKQNVSIPVVANGDICTPEKARSVLDYTGADAVMIGRGAQGRPWLFREIQHY 240

Query: 250 LEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVSWYLQEHEQASAFRRTF 309
           LE G  +  + + E + +ML H+  L+  YGEY G RIARKHV WYL +  Q S FR  F
Sbjct: 241 LETGNKLAPIEVDEKRQVMLEHLKNLYALYGEYKGLRIARKHVGWYLDQEAQRS-FRADF 299

Query: 310 NAIETADQQLDALEGYFDNV 329
           N +ET ++Q   LE YFD +
Sbjct: 300 NRLETVEEQRSMLERYFDEL 319