Pairwise Alignments

Query, 331 a.a., tRNA dihydrouridine synthase DusB from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., TIM-barrel protein, yjbN family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 84.0 bits (206), Expect = 5e-21
 Identities = 79/312 (25%), Positives = 139/312 (44%), Gaps = 39/312 (12%)

Query: 17  LKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVH------- 69
           L     +APM   TDR +R            + +MS N  L+    +   ++H       
Sbjct: 12  LDRTFSIAPMLDWTDRHYRYF----------ARLMSANALLYTEMVTTGAILHGRGDYLT 61

Query: 70  -EGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPD 128
              E    ++Q+ GS+P  +A  A+ + E G   +++N+GCP+ +V     G+ L+  P+
Sbjct: 62  YNQEEHPLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPE 121

Query: 129 VIEDILKAVVNAVNVPVTLKTRTGWD-TDNKNCLS---IAQLAEDCGIQALALHGRTRAC 184
           ++ + + A+   V++PVT+KTR G D  D+   L+      +A+ CG     +H R    
Sbjct: 122 LVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCG--EFIIHARKAWL 179

Query: 185 MYKGEAE--------YDSIKAVKAAV-SIPVIANGDIDSPEKARYVLEYTGADALMIGRP 235
                 E        YD +  +K    ++ +  NG I S E+A+  L++   D +M+GR 
Sbjct: 180 QGLSPKENREIPPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH--LDGVMVGRE 237

Query: 236 AQGRPWIFQEIQHFLEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVSWY 295
           A   P++  ++   L  G+T   +    V + ML ++ A  Q  G         +H+   
Sbjct: 238 AYQNPYMLAQVDQVL-CGSTKAVMSREAVIEAMLPYIEAHLQVGGRL---NHITRHMIGL 293

Query: 296 LQEHEQASAFRR 307
            Q    A A+RR
Sbjct: 294 FQGLPGARAWRR 305