Pairwise Alignments

Query, 331 a.a., tRNA dihydrouridine synthase DusB from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  118 bits (295), Expect = 2e-31
 Identities = 80/249 (32%), Positives = 130/249 (52%), Gaps = 11/249 (4%)

Query: 78  VQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKAV 137
           VQ+ G +P  MAE A  ++E G+  +D N GCPAK VN+   G+ LL+YP+ I DI++A+
Sbjct: 67  VQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHDIVRAM 126

Query: 138 VNAVNV--PVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKGEAEYDSI 195
             AV    PVT K R G++ D    +  A    + G   LA+H R++   YK  A ++ I
Sbjct: 127 RQAVPAEHPVTAKIRLGYE-DKSLFMENALAVYEAGATELAIHARSKVDGYKPPAYWEYI 185

Query: 196 KAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEIQHFLEHGTT 255
             V+  + IPVIANG+I + + A+  ++ TG D++MIGR A   P +   I+      T 
Sbjct: 186 TEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIK------TG 239

Query: 256 MPELPISEVKDIMLGHV-TALHQFYGEYLGPRIARKHVSWYLQEHEQASAFRRTFNAIET 314
                 ++   +ML +    L     +Y   RI ++  S+  +++ +A    R     +T
Sbjct: 240 ATPYSWADTLQLMLSYTQRELSGRKSDYYPARI-KQWFSYLNRQYPEADTLFRELRIYKT 298

Query: 315 ADQQLDALE 323
            ++ +  LE
Sbjct: 299 TEEIVRVLE 307