Pairwise Alignments

Query, 331 a.a., tRNA dihydrouridine synthase DusB from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  443 bits (1140), Expect = e-129
 Identities = 213/320 (66%), Positives = 261/320 (81%), Gaps = 1/320 (0%)

Query: 10  LKIGNYQLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVH 69
           ++IG YQLKN LIVAPMAGVTD+ FR LCLRYGA +AVSEM+S NP +W T KS+ RM H
Sbjct: 1   MQIGPYQLKNQLIVAPMAGVTDQAFRNLCLRYGAALAVSEMLSSNPEVWDTDKSRQRMTH 60

Query: 70  EGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDV 129
            GE GIRSVQIAG+DP+LMA+AAQF+VE GA IIDINMGCPAKKVNKKLAGSAL++ P +
Sbjct: 61  SGEEGIRSVQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPL 120

Query: 130 IEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKGE 189
           ++DIL+AVV AV+VPVTLK RTGW+ +++N + IAQ+AEDCGI +LA+HGRTR CMYKG 
Sbjct: 121 VKDILQAVVAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTRQCMYKGN 180

Query: 190 AEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEIQHF 249
           AEYD+IKA+K  VSIPV+ANGDIDSPEKAR+VL+YTG DALMIGR AQGRPWIF+EIQH+
Sbjct: 181 AEYDTIKAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWIFREIQHY 240

Query: 250 LEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVSWYLQEHEQASAFRRTF 309
           LE G  +  + ++E + +ML H+T L+  YGEY G R ARKH+ WYL + +Q   FR  F
Sbjct: 241 LETGNKLAPIEVAEQRQVMLEHLTKLYDLYGEYKGIRFARKHIGWYLDQEDQRQ-FRADF 299

Query: 310 NAIETADQQLDALEGYFDNV 329
           N +ETA +Q   +E YFD +
Sbjct: 300 NQLETAAEQYSLVEYYFDEL 319