Pairwise Alignments

Query, 331 a.a., tRNA dihydrouridine synthase DusB from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  208 bits (530), Expect = 1e-58
 Identities = 110/287 (38%), Positives = 173/287 (60%), Gaps = 3/287 (1%)

Query: 10  LKIGNYQL-KNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMV 68
           +KI +  L ++ +++APM  VTD  FR +C ++GA M  +E +S +  +   +K+  ++ 
Sbjct: 1   MKISHIDLGEHPILLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRAVSKTAQKLS 60

Query: 69  HEGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPD 128
              E    ++QI G D + M EAA+   +    I+DIN GCP K+V  K AG+ +L+   
Sbjct: 61  ISDEERPVAIQIYGKDTETMVEAAKIVEQAQPDILDINFGCPVKRVAGKGAGAGMLQNIP 120

Query: 129 VIEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKG 188
            + +I +AVV+AV +PVT+KTR GWD +NK  + +A+  +DCGI AL +HGRTRA MY G
Sbjct: 121 KMLEITRAVVDAVKIPVTVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQMYTG 180

Query: 189 EAEYDSIKAVK--AAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEI 246
           EA++  I  VK    + IP+I NGD+ +P++ +   +  G DA+MIGR + GRPWIF+E+
Sbjct: 181 EADWTLIGEVKNNQRMHIPIIGNGDVTTPQRCKECFDRYGVDAVMIGRASFGRPWIFKEV 240

Query: 247 QHFLEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVS 293
           +H+LE G  +P L      +++   V        E  G    R+H++
Sbjct: 241 KHYLETGEELPPLSFEWCMEVLRQEVIDSVNLLDERRGILHVRRHLA 287