Pairwise Alignments

Query, 331 a.a., tRNA dihydrouridine synthase DusB from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., tRNA-dihydrouridine synthase A (RefSeq) from Shewanella sp. ANA-3

 Score = 87.0 bits (214), Expect = 6e-22
 Identities = 81/313 (25%), Positives = 140/313 (44%), Gaps = 39/313 (12%)

Query: 16  QLKNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVH------ 69
           QL     +APM   TDR +R            + +MS N  L+    +   ++H      
Sbjct: 11  QLDRTFSIAPMLDWTDRHYRYF----------ARLMSANALLYTEMVTTGAILHGRGDYL 60

Query: 70  --EGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYP 127
               E    ++Q+ GS+P  +A  A+ + E G   +++N+GCP+ +V     G+ L+  P
Sbjct: 61  AYNQEEHPLALQLGGSNPAELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEP 120

Query: 128 DVIEDILKAVVNAVNVPVTLKTRTGWD-TDNKNCLS---IAQLAEDCGIQALALHGRTRA 183
           +++ + + A+  AV++PVT+KTR G D  D+   L+      +A+ CG     +H R   
Sbjct: 121 ELVAECVDAMKQAVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCG--EFIIHARKAW 178

Query: 184 CMYKGEAE--------YDSIKAVKAAV-SIPVIANGDIDSPEKARYVLEYTGADALMIGR 234
                  E        YD +  +K    ++ +  NG I S E+A+  L++   D +M+GR
Sbjct: 179 LQGLSPKENREIPPLDYDRVYQLKRDYPTLNISINGGITSLEQAKTHLQH--LDGVMVGR 236

Query: 235 PAQGRPWIFQEIQHFLEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVSW 294
            A   P+I  ++   L  G+    +    V + ML ++ A  Q  G         +H+  
Sbjct: 237 EAYQNPYILAQVDQLL-CGSQKAVMSREAVIETMLPYIEAHLQAGGRL---NHITRHMIG 292

Query: 295 YLQEHEQASAFRR 307
             Q    A A+RR
Sbjct: 293 LFQGLPGARAWRR 305