Pairwise Alignments

Query, 332 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., Ribose operon repressor from Pseudomonas fluorescens FW300-N2E2

 Score =  148 bits (374), Expect = 2e-40
 Identities = 105/331 (31%), Positives = 170/331 (51%), Gaps = 31/331 (9%)

Query: 7   ATLQDVADQVGVTKMTVSRYLRSPDSVAAATREKIALAVEALGYIENRAPAMLSKSSSKA 66
           AT++DVA   G++  TVS  +     V+   R K+  A+E L Y+ +     L   ++  
Sbjct: 2   ATIKDVAALAGISYTTVSHVVNKTRPVSEEVRLKVEAAIERLDYVPSAVARSLKAKTTAT 61

Query: 67  IGILLPSLSNQIFASFVQGIEAVTKANGYETLLAHFGYDEEEEERKIASLLAYQVDGLI- 125
           IG+L+P+  N  FA   +GIE   + NGY  +L +   + +++   +  LL  ++DGLI 
Sbjct: 62  IGLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNPDKQRSYLRVLLEKRIDGLIF 121

Query: 126 --------LTESHHTQRTLQMIASSGVPVVETMELPANPIDMAVGMDHVEASYQAVKKII 177
                   L E     RT  +I   G+  V+         D+ V +DH   +Y A + ++
Sbjct: 122 ASAGGDVGLAEGLSNVRTPMVIVDRGLEGVDA--------DL-VRIDHEYGAYLATRHLL 172

Query: 178 AAGKRSIAYFGARLDTR-TKLRMQGYDQAMQEAG--LPIKHVLTGSHSS---FSLAAQLL 231
             G R IA+ G   +T   ++R+ GY +A++EAG  LP++ +L    +S   +  AAQLL
Sbjct: 173 ELGHRDIAFIGGPANTSVAQMRLAGYCRALKEAGIELPVERMLESDFTSTGGYRAAAQLL 232

Query: 232 DEAFARYPDLDGVFCTNDDIAIGTLLVAQQRGIRVPEQLSVIGYNALDIGRTITPKLTSV 291
                + P    +F  ND I IG L  A +R +RVP +LSVIG++ + + R + P LT+V
Sbjct: 233 ----VQQPP-SAIFAANDMIGIGVLRAAAERNVRVPSELSVIGFDDIQMSRYVYPALTTV 287

Query: 292 DSPRYAIGEKSAELLI--AALKGERAEQQVV 320
                 +GE +AE+L+   A  G   EQ++V
Sbjct: 288 GQSILQLGEMAAEVLLRRIATPGLATEQRIV 318