Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  289 bits (740), Expect = 2e-82
 Identities = 181/561 (32%), Positives = 302/561 (53%), Gaps = 27/561 (4%)

Query: 19  LSIRNRLFLLTVVILVLLAIPFAIM------------VKDYRHDLMLEKQVQTQHLVESA 66
           LS++ ++  L ++ ++L A+  ++             V+  R  L+ E +   Q+ V   
Sbjct: 3   LSLKAKVLSLAILPVLLSAVIISLTTAFILKEQASKEVQQTRERLLSEAKATLQNYVAVG 62

Query: 67  YTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNG 126
            T ++     AT G     +A+  A + ++ + YG + YF+  D++   +     PD  G
Sbjct: 63  LTAIKPLYDAATPGD---NEARAQAIKLLSNISYGKDGYFFGYDSETIRLFKANSPDGVG 119

Query: 127 KDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIG 186
           K  +  +DPNG  +  ++V V +      +EY  P PG++  V K+ Y +    W   +G
Sbjct: 120 KSFKDNRDPNGVYVNRDLVKVAKDGTH-YLEYSSPLPGSQDLVPKLGYTEYLSKWDLAVG 178

Query: 187 TGIYVDDVNALVM-------QRLSSILVWVVG----TLLVLIVLASLIGRSITQPCEETL 235
           + + +D + A V         R+  +++ +VG     LLV+ V+  L+  +I +P     
Sbjct: 179 SSVNLDGIEAQVALVEAKVHDRVQGVILSIVGIAAVVLLVIAVVGLLLANAILRPLHLMK 238

Query: 236 ATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADEL 295
             L +IA GEGDLTR+LT+T +DEL Q+A +FN F +KI  ++++IT +T  +TG   ++
Sbjct: 239 DNLDDIAAGEGDLTRRLTITSQDELGQLAGSFNRFVDKIHGLVRQITDMTSQLTGLVTQV 298

Query: 296 TQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMI 355
           ++ AQ +      Q    D VA+A+N++ ++ QEVA+SA  A  AA   ++     + ++
Sbjct: 299 SEQAQRSEQAMERQRHETDQVATAINEMSSAAQEVARSAQGAAVAAQQTDEEGQSAKRVV 358

Query: 356 TLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAG 415
             +  Q+ +L + +  +      L  +  S+ +VL VIR +AEQTNLLALNAAIEAARAG
Sbjct: 359 AGSIQQIHALVNDIRSSGVSLDSLQQDVASIVSVLGVIRSIAEQTNLLALNAAIEAARAG 418

Query: 416 EQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAE 475
           E GRGFAVVADEVR LA+RTQ ST EI+ +I +LQ    +  ++M ++ +    T ++A 
Sbjct: 419 EAGRGFAVVADEVRALASRTQQSTQEIQGMIDRLQSGTHAAVEAMRRSSEAGDGTSERAN 478

Query: 476 QAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAA 535
           +A   L+ +   I TI S N  IA A+ +Q+   +EI R++ QIA      + +    A 
Sbjct: 479 EAGASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQ 538

Query: 536 ASEQLMENGQHLARSLAVFKI 556
            S  L + GQ L + +  F+I
Sbjct: 539 TSRSLADLGQRLGKLVGQFRI 559