Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  219 bits (557), Expect = 3e-61
 Identities = 131/356 (36%), Positives = 206/356 (57%), Gaps = 6/356 (1%)

Query: 189 IYVDDVNALVMQRLSSILVWVVGTLLVL----IVLASLIGRSITQPCEETLATLKNIAQG 244
           +  + +N    Q+ SS   WVV  LL+     ++ A L+  SIT+P    L   + IA+G
Sbjct: 167 LQAEALNKGAAQQYSSAFNWVVTLLLIATGLTLLFAWLLTNSITKPIANALDAAEEIAKG 226

Query: 245 EGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASS 304
             +LTR +TV G DE  ++ +A +    K+R  +Q I+     +  +A+EL  V   ++ 
Sbjct: 227 --NLTRPITVDGSDEAGRLLRAMSTMQEKLRDTLQRISGSATQLASAAEELNSVTDESAR 284

Query: 305 KAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQS 364
               Q+  ++  A+A+N++ ++ +EVA++A    +A+ +A  +A  GR+++  T + ++ 
Sbjct: 285 GLTQQNNEIEQAATAVNEMTSAVEEVARNAVSTSEASKNATTSAGDGRDLVQETVSAIER 344

Query: 365 LRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVV 424
           +   +  T      LA E++ +  VL+VIRG+A+QTNLLALNAAIEAARAGE GRGFAVV
Sbjct: 345 MSADVQSTAALIGNLADESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVV 404

Query: 425 ADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEI 484
           ADEVR LA RTQ ST+EIE++I  +Q   +    SM  + +++  T   A  A   L+ I
Sbjct: 405 ADEVRALAHRTQQSTSEIERMIGSIQSGTEHAVDSMRNSTERAESTLNIARGAGMSLDTI 464

Query: 485 EAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQL 540
              I  I   N  IA A+ +Q++   E+ RNL  I + S Q++  ANQ +AAS +L
Sbjct: 465 NTAIVEINERNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSATGANQTSAASAEL 520



 Score = 38.5 bits (88), Expect = 7e-07
 Identities = 56/247 (22%), Positives = 100/247 (40%), Gaps = 21/247 (8%)

Query: 309 QHQAVDTVASAMNQLHASNQ--EVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLR 366
           Q +  D V     Q+ A+    E   SA     A     Q   Q R++     T  ++ +
Sbjct: 76  QQKTYDLVEQRSQQIRAAQTTYEKLISASDERAAYDQLVQLLGQYRQLEERMKTLSRNNQ 135

Query: 367 DQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVAD 426
               R    T++L++      A+   I  + E  NL A      AA+       + V   
Sbjct: 136 VDELRALLNTELLSNS----DAINAAIDRLVEINNLQAEALNKGAAQQYSSAFNWVVTLL 191

Query: 427 EVRTLATRTQA--STNEIEQIIAQLQKKAQSVSQ-SMTQTQQQSRVTQQQAEQAQQMLNE 483
            + T  T   A   TN I + IA     A+ +++ ++T+      +T   +++A ++L  
Sbjct: 192 LIATGLTLLFAWLLTNSITKPIANALDAAEEIAKGNLTRP-----ITVDGSDEAGRLLRA 246

Query: 484 IEAQIKTILSFNQHIAGASAQQSEA-------TDEITRNLTQIAEHSTQASAQANQVAAA 536
           +    + +    Q I+G++ Q + A       TDE  R LTQ      QA+   N++ +A
Sbjct: 247 MSTMQEKLRDTLQRISGSATQLASAAEELNSVTDESARGLTQQNNEIEQAATAVNEMTSA 306

Query: 537 SEQLMEN 543
            E++  N
Sbjct: 307 VEEVARN 313



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 1/107 (0%)

Query: 228 TQPCEETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITES 287
           T   E  + ++++  +   D  R  T   +  L  IA+   +  + I   I EI      
Sbjct: 419 TSEIERMIGSIQSGTEHAVDSMRNSTERAESTL-NIARGAGMSLDTINTAIVEINERNLV 477

Query: 288 VTGSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSA 334
           +  +A+E  QVA+       +        A+  NQ  A++ E+++ A
Sbjct: 478 IASAAEEQAQVAREVDRNLVNIRDLSVQSATGANQTSAASAELSRLA 524