Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N1B4

 Score =  281 bits (718), Expect = 6e-80
 Identities = 179/567 (31%), Positives = 303/567 (53%), Gaps = 28/567 (4%)

Query: 14  VSLRHLSIRNRLFLLTVVILVLLAIPFAIM------------VKDYRHDLMLEKQVQTQH 61
           V++  +S++ ++  L V+ ++L A+  ++             V+  R  L+ + +   Q 
Sbjct: 24  VNVMRMSLKAKVLSLAVLPVLLFALVISLTTLFILQEQARKEVEQTRQRLLSDAKATLQS 83

Query: 62  LVESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMK 121
            V  A T ++     A  G    + A+    + ++ + YG + YF+  D+    +     
Sbjct: 84  YVAVAMTTIKPLYDAAAPGD---DAARAQVVKLLSSITYGKDGYFFGYDSNTVRLFKANS 140

Query: 122 PDLNGKDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQP-VDKVSYVKLFKP 180
           P+  G+  +  +DPNG  +  ++V V +      ++Y    PG  Q  V K+ Y +    
Sbjct: 141 PEGVGQSFKDNRDPNGVYVNRDLVKVAKDGTH-YLQYSSTLPGNTQVLVPKLGYTEYLPK 199

Query: 181 WGWIIGTGIYVDD-------VNALVMQRLSSILVWVVGTLLVLIVLAS----LIGRSITQ 229
           W   +GT + +D        V A V +R+  +++ +VG  +V++++ +    L+  +I +
Sbjct: 200 WDMAVGTSVNLDGIEAQVAVVEAKVQERMQGVVLSIVGIAVVVLLMIAAAGMLLANTILR 259

Query: 230 PCEETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVT 289
           P     A L +IA GEGDLTR+LT+T +DEL ++A +FN F +KI  ++++IT +T  +T
Sbjct: 260 PLNLMKANLDDIAAGEGDLTRRLTITSQDELGELAGSFNRFVDKIHGLVRQITEMTSQLT 319

Query: 290 GSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAAS 349
           G  ++++  AQ +      Q    D VA+A+N++ A+ QEVA+SA  A  AA   ++   
Sbjct: 320 GLVNQVSDQAQRSDQAMERQRHETDQVATAINEMSAAAQEVAKSAQNAAVAAQQTDEEGQ 379

Query: 350 QGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAI 409
             + ++  +  ++ +L + +  +      L  +  S+ +VL VIR +AEQTNLLALNAAI
Sbjct: 380 AAKRVVAGSIVKIHALVNDIRSSGVSLDSLQKDVSSIVSVLGVIRSIAEQTNLLALNAAI 439

Query: 410 EAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRV 469
           EAARAGE GRGFAVVADEVR LA+RTQ ST EI+ +I +LQ   QS  ++M ++ +    
Sbjct: 440 EAARAGEAGRGFAVVADEVRALASRTQISTQEIQGMIDRLQAGTQSAVEAMRRSSEAGDG 499

Query: 470 TQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQ 529
           T  QA +A   L+ +   I TI S N  IA A+ +Q+   +EI R++ QIA      + +
Sbjct: 500 TSAQANEAGASLDAMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADE 559

Query: 530 ANQVAAASEQLMENGQHLARSLAVFKI 556
               A  S  L + GQ L + +  F+I
Sbjct: 560 TQLGAQTSRSLADLGQRLGKLVGQFRI 586