Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  222 bits (566), Expect = 3e-62
 Identities = 137/348 (39%), Positives = 201/348 (57%), Gaps = 6/348 (1%)

Query: 214 LVLIVLASL----IGRSITQPCEETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNL 269
           LVL++L SL    + RS+       +A+L++IA+G+GDLT+++ V   DE+  + + FN 
Sbjct: 194 LVLVILVSLGAWLVIRSVMVNIRGVIASLQSIARGDGDLTQRVNVESNDEIGAMIELFNS 253

Query: 270 FTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQE 329
           F +K++  I++I      +   + EL ++ Q +   A  Q    D++   +  +  S QE
Sbjct: 254 FLDKLQSTIRQIIDAATPLGQVSKELYKLTQGSEENAKSQQHHTDSITRDILTMTGSIQE 313

Query: 330 VAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAV 389
           VAQ + QA   A+SA + A+  RE +   ST +  L D +    +  + L  ETQ V +V
Sbjct: 314 VAQRSQQASDEANSAARQAATAREHVGSLSTGISDLGDSVMGAVKAMEQLEEETQEVGSV 373

Query: 390 LEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQL 449
           L VIR +AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA +T AST EI+QII +L
Sbjct: 374 LTVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTAASTAEIQQIIQRL 433

Query: 450 QKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEAT 509
           Q  A +V   MT   ++SR + Q++ +A Q+L  I   +  I   N  IA  + +Q   +
Sbjct: 434 QNSANTVLNVMTSNGEKSRASIQRSIEATQLLETIARTVNQIDELNAGIAQFTQEQIGLS 493

Query: 510 DEITRNLTQIAEHSTQASAQ-ANQVAAASEQLMENGQHLARSLAVFKI 556
             I +  TQ+ +   QA+A  A   A   EQL+  G HL  +   F++
Sbjct: 494 SSIQQE-TQVLQQDAQATANGAEATARLGEQLVSTGDHLRAATGQFRV 540



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 56/266 (21%), Positives = 97/266 (36%), Gaps = 63/266 (23%)

Query: 350 QGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSV--------SAVLEVIRGVAEQTN 401
           + RE++    TQ QSL   L+   Q+ Q L    +SV        +A  ++I G A   +
Sbjct: 82  EAREVLQQIDTQQQSLAALLSDQRQQHQALGDWRKSVRDYADNALAASTKLIDGSASFDD 141

Query: 402 LLAL--NAAIEAARAGEQGRGFAVVADE--VRTLATRTQASTN----------------- 440
           L       A + A+A + G  F   A +   +TL    +A+ N                 
Sbjct: 142 LRPSLDRMASDLAQAQKLGSDFRAQAYDSFQQTLVETREANANTTRLGIILSLVLVILVS 201

Query: 441 ------------EIEQIIAQLQKKAQSVSQSMTQTQQQSR-VTQQQAEQAQQMLNEIEAQ 487
                        I  +IA LQ  A+       +   +S        E     L+++++ 
Sbjct: 202 LGAWLVIRSVMVNIRGVIASLQSIARGDGDLTQRVNVESNDEIGAMIELFNSFLDKLQST 261

Query: 488 IKTILSFNQHIAGASAQ--------------QSEATDEITR-------NLTQIAEHSTQA 526
           I+ I+     +   S +              Q   TD ITR       ++ ++A+ S QA
Sbjct: 262 IRQIIDAATPLGQVSKELYKLTQGSEENAKSQQHHTDSITRDILTMTGSIQEVAQRSQQA 321

Query: 527 SAQANQVAAASEQLMENGQHLARSLA 552
           S +AN  A  +    E+   L+  ++
Sbjct: 322 SDEANSAARQAATAREHVGSLSTGIS 347