Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 584 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  289 bits (739), Expect = 2e-82
 Identities = 183/564 (32%), Positives = 300/564 (53%), Gaps = 27/564 (4%)

Query: 16  LRHLSIRNRLFLLTVVILVLLAIPFA-IMVKDY-----------RHDLMLEKQVQTQHLV 63
           L +L +R +L LL +  ++LLAI  + I V +            R  L+ +++ + +H V
Sbjct: 25  LSNLRLRMKLLLLALGPILLLAILLSGIAVYELQSLAEQQEAHTRDSLIQDRRAELKHYV 84

Query: 64  ESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPD 123
           E A   +    +++ +G +   QA++ A   + +L YG + YFW  D Q   ++     D
Sbjct: 85  ELARNAIGPIYERSAEGDM---QARDQAVAILERLSYGKDGYFWGYDTQAVRILQGNTKD 141

Query: 124 LNGKDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGW 183
             G+    ++DPNG     E+V   Q   +  V+Y +    + + V KV Y +    W  
Sbjct: 142 KIGQSFYDYRDPNGVYAIRELVRAGQDGSR-YVDYSFVLGNSSELVPKVGYAEFLPKWKM 200

Query: 184 IIGTGIYVDDVN-------ALVMQRLSSI----LVWVVGTLLVLIVLASLIGRSITQPCE 232
           + GT + +D V        A   +R+  +    LV     L+++ +LA  +  ++  P  
Sbjct: 201 VFGTSLNLDGVERDVQAARAEFQKRIDGLVTIMLVSAFALLVLMALLAIFMSNALLSPLL 260

Query: 233 ETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSA 292
                L ++AQG+GDLT++L +T +DEL ++A +FN F  KI  ++Q++   T  ++G  
Sbjct: 261 LIKRNLDDMAQGDGDLTQRLPITSQDELGELAMSFNRFVEKIHSLVQQVAGTTTQLSGLV 320

Query: 293 DELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGR 352
             +   AQ +     DQ    D VA+A+N++ A+  EVA SA +A +AA   +Q     +
Sbjct: 321 GAVASQAQRSEQAMADQRSETDQVATAINEMSAAAHEVAMSAQRAAEAARETDQQGVAAK 380

Query: 353 EMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAA 412
           +++  +  Q+  L  +L  + +  + L  + + +  VL+VIR +AEQTNLLALNAAIEAA
Sbjct: 381 QVVDQSIRQIHELVGELRGSGESLEGLQQDVKGIVGVLDVIRAIAEQTNLLALNAAIEAA 440

Query: 413 RAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQ 472
           RAGE GRGFAVVADEVR LA+RTQ ST EI+ +I +LQ    +   +M +  ++   T+ 
Sbjct: 441 RAGEAGRGFAVVADEVRALASRTQQSTGEIQGMIDRLQSATSNTVSTMLRAGEKGESTRD 500

Query: 473 QAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQ 532
           QA QA + L+ I A I TI S N  IA A+ +Q+   +EI R++  IA+     ++ A Q
Sbjct: 501 QANQAGESLDAISALIGTINSMNAQIAAAAEEQTAVAEEINRSVHHIADAVDGVASDAAQ 560

Query: 533 VAAASEQLMENGQHLARSLAVFKI 556
            A  S +L    + L + +  F+I
Sbjct: 561 GAQTSRELNGLAERLQKLVGQFRI 584