Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 561 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  299 bits (766), Expect = 2e-85
 Identities = 185/564 (32%), Positives = 304/564 (53%), Gaps = 27/564 (4%)

Query: 16  LRHLSIRNRLFLLTVVILVLLAIPFA----IMVKDY--------RHDLMLEKQVQTQHLV 63
           L  L +R +L LL +  ++LLA+  +    + +KD         R  L+ +++ + +H V
Sbjct: 2   LSSLRLRAKLLLLALGPILLLAVVLSGVSVVQLKDLADQQEAQTRASLIRDRRAELKHYV 61

Query: 64  ESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPD 123
           E A   +    +++ +G +   QA++ A     +L YG+  YFW  D Q   V      +
Sbjct: 62  ELAKNAIGPIYERSAEGDM---QARSQAVAIFERLSYGSEGYFWGYDGQSRRVFQGATRE 118

Query: 124 LNGKDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGW 183
             G+    ++DPNG     E+V   Q +    V+Y +  PG+   V KV Y +    W  
Sbjct: 119 RIGESFADYRDPNGVFAIRELVKAGQDSSH-YVDYSFAVPGSNALVPKVGYAEYLPKWNL 177

Query: 184 IIGTGIYVDDVN-------ALVMQRLSSILVWVVGTLLVLIVL----ASLIGRSITQPCE 232
           + GT + +DDV        A+   R+ S+ + ++G+ L+L++L    A L+  +I +P  
Sbjct: 178 VFGTSLNLDDVERDVVEARAVFQARIDSLTLIMLGSALLLLILMAGLAVLMSNAILRPLL 237

Query: 233 ETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSA 292
           +    L ++AQG+GDLT +L +T +DEL +++ +FN F  KI  +++++   T  ++G  
Sbjct: 238 QIKQNLDDMAQGDGDLTHRLPITSRDELGELSTSFNRFVEKIHALVRQVAGTTTQLSGLV 297

Query: 293 DELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGR 352
             +   AQ +     DQ    D VA+A+N++ A+  EVA SA +A +AA   +Q     +
Sbjct: 298 GAVASQAQRSEQAMADQRSETDQVATAINEMSAAAHEVAMSAQRAAEAARETDQQGVAAK 357

Query: 353 EMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAA 412
           +++  +  Q+  L  +L  + +  + L  + + +  VL+VIR +AEQTNLLALNAAIEAA
Sbjct: 358 QVVDQSIRQIHELVGELRGSGESLEGLQQDVKGIVGVLDVIRAIAEQTNLLALNAAIEAA 417

Query: 413 RAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQ 472
           RAGE GRGFAVVADEVR LA+RTQ ST EI+ +I +LQ        +M +  ++   T+ 
Sbjct: 418 RAGEAGRGFAVVADEVRALASRTQQSTGEIQGMIDRLQNATSHTVGTMLRAGEKGESTRN 477

Query: 473 QAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQ 532
            A QA + L+ I A I TI S N  IA A+ +Q+   +EI R++  IA+     ++ A Q
Sbjct: 478 HANQAGESLDAISALIGTINSMNAQIAAAAEEQTAVAEEINRSVHHIADAVDGVASDAAQ 537

Query: 533 VAAASEQLMENGQHLARSLAVFKI 556
            A  + +L    + L R +  F+I
Sbjct: 538 GAQTARELNGLAEQLQRLVGQFRI 561