Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  221 bits (562), Expect = 7e-62
 Identities = 126/332 (37%), Positives = 202/332 (60%), Gaps = 2/332 (0%)

Query: 209 VVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFN 268
           ++   L+ +V A ++ +SIT P    L   + IAQG  +LTR +++ G DE  ++  A  
Sbjct: 196 LIAATLLTLVFAWMLIKSITTPIATALLAAETIAQG--NLTRPISIDGTDEAGRLLLAMK 253

Query: 269 LFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQ 328
              +K+R  +Q I+     +  +A+EL  V   ++     Q+  ++  A+A+NQ+ ++ +
Sbjct: 254 TMQDKLRDTLQGISGSATQLASAAEELNAVTDESARGLVQQNDEIEQAATAVNQMTSAVE 313

Query: 329 EVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSA 388
           EVA++A    QA+ SA  +A  GR+++  T + ++ +   +  T +    LA+E++ +  
Sbjct: 314 EVARNATSTSQASRSAATSAGDGRDLVQETVSAIERMSGDVQGTAELIISLANESRDIGK 373

Query: 389 VLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQ 448
           VL+VIRG+A+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ ST+EIE++I+ 
Sbjct: 374 VLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMISS 433

Query: 449 LQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEA 508
           +Q   +    SM  + +++  T   A+ A Q LN I + ++ I   N  IA A+ +Q++ 
Sbjct: 434 IQTGTEQAVSSMRNSTERAESTLNIAKGAGQALNTINSAVEEINERNMVIASAAEEQAQV 493

Query: 509 TDEITRNLTQIAEHSTQASAQANQVAAASEQL 540
             E+ RNL  I + S Q++  ANQ +AAS +L
Sbjct: 494 AREVDRNLVNIRDLSAQSTNGANQTSAASTEL 525



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 28/151 (18%)

Query: 186 GTGIYVDDVNALV--MQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQ 243
           G  +  D+V AL    Q+ +S +  ++ ++      A    R+ T+  E TL    NIA+
Sbjct: 405 GFAVVADEVRALAHRTQQSTSEIERMISSIQTGTEQAVSSMRNSTERAESTL----NIAK 460

Query: 244 GEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSAS 303
           G G                         N I   ++EI      +  +A+E  QVA+   
Sbjct: 461 GAGQAL----------------------NTINSAVEEINERNMVIASAAEEQAQVAREVD 498

Query: 304 SKAYDQHQAVDTVASAMNQLHASNQEVAQSA 334
               +         +  NQ  A++ E+++ A
Sbjct: 499 RNLVNIRDLSAQSTNGANQTSAASTELSRLA 529