Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  221 bits (563), Expect = 6e-62
 Identities = 139/359 (38%), Positives = 211/359 (58%), Gaps = 5/359 (1%)

Query: 201 RLSSILVWVVGTL---LVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVTGK 257
           + SS+L+  +G +   LV I+L  LI R IT+P    +A+ + IA G  DLT+ +  T  
Sbjct: 214 KASSVLMLEIGVVIAFLVAIMLGVLITRMITRPLAVAVASAQRIAGG--DLTQPIVSTSG 271

Query: 258 DELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDTVA 317
           DE  Q+  A +     +++ IQ+I   ++ +  +A+EL+ V   ++     Q+  +   A
Sbjct: 272 DEAGQLLNALSDMQGGLKNTIQQIASASDQLASAAEELSAVTDESTRGLTRQNDEIQQAA 331

Query: 318 SAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQETQ 377
           +A+NQ+ A+ +EVA++A    +A+ SA   A  GR  +  T   + ++  ++T +     
Sbjct: 332 TAVNQMTAAVEEVARNAVSTSEASKSATDDAVDGRGQVDHTVKGITTMVHEITASTGAVS 391

Query: 378 VLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRTQA 437
            LA   + +S VL+VIR +AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RTQA
Sbjct: 392 ELAGHVREISKVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQA 451

Query: 438 STNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQH 497
           ST EIE +I+ +Q  A     +M ++   +  TQ+ A +A   L +I   + TI   N  
Sbjct: 452 STVEIEGMISTVQSGADGAVAAMGKSLSLATNTQELALRAGAALEKITLGVATINERNLV 511

Query: 498 IAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSLAVFKI 556
           IA AS +Q++   E+ RNL  I + STQ++A ANQ +A+S++L          +A FK+
Sbjct: 512 IASASEEQAQVAREVDRNLINIQDLSTQSAAGANQTSASSQELSRLATSFNSLVANFKL 570