Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  234 bits (598), Expect = 6e-66
 Identities = 140/355 (39%), Positives = 212/355 (59%), Gaps = 2/355 (0%)

Query: 202 LSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVTGKDELA 261
           ++ +L   V  LL+ I  A LI R IT+P + T+   + IA  +GDLT  L+ T +DEL 
Sbjct: 290 VTQLLTVAVIVLLLGIFAAILITRQITRPLDSTVIAARRIA--DGDLTNDLSTTRQDELG 347

Query: 262 QIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDTVASAMN 321
            +       T  +R +I  I+     +  +A+EL+ V++  S+    Q   VD VA+AMN
Sbjct: 348 LLQNTMQHMTVSLRTLIGGISNGVTQIATAAEELSAVSEQTSAGVTQQKLEVDQVATAMN 407

Query: 322 QLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQETQVLAS 381
           Q+ ++ QEVAQ+   A QAA  A+  A+ G  ++   + ++  L  ++ +  +  Q L  
Sbjct: 408 QMASTVQEVAQNTEDASQAARQASDRAAHGSSVVQHATREISQLAGEVGQLGEAMQRLIQ 467

Query: 382 ETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTNE 441
           ++  +  V++VI+ VAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ+ST E
Sbjct: 468 DSDKIGGVIDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQSSTTE 527

Query: 442 IEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGA 501
           IE +I  LQ    + S+ M  ++Q++  T   A QA++ L EI   I TI   +Q I+ A
Sbjct: 528 IEALIKSLQDGTGAASELMNASRQRTEGTVALARQAEESLLEITHSIVTIEQMSQQISAA 587

Query: 502 SAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSLAVFKI 556
           + +QS  TDEI R++  + + + Q++    Q AA++ +L   G +L   +A F+I
Sbjct: 588 AEEQSAVTDEINRSVISVRDIADQSATATEQSAASTVELARLGSNLQDMVARFRI 642