Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  415 bits (1066), Expect = e-120
 Identities = 223/543 (41%), Positives = 334/543 (61%)

Query: 14  VSLRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHY 73
           +S+R LSI  RL+L+ VV +++L +  A +++   +DL   K  +T H+V++A  +L  Y
Sbjct: 1   MSMRSLSISRRLWLILVVSVLMLFVLSATLLRQLHNDLYQAKAEKTMHVVQTASGILSFY 60

Query: 74  AQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFK 133
                 G +T E AQ  A + I  LRY  +DYFWIND +P M+MHP    L G+DL + K
Sbjct: 61  QGLEAAGGMTREAAQQQALKEIKSLRYSQSDYFWINDLRPVMIMHPTNAKLEGQDLSTIK 120

Query: 134 DPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDD 193
           DP+G A+F EMV + +    G+V Y+WPKPGA +PV K SYV+LF+PWGWI+G+G+YVDD
Sbjct: 121 DPDGFAVFNEMVTLVKAQGAGMVNYRWPKPGASEPVKKTSYVQLFQPWGWILGSGVYVDD 180

Query: 194 VNALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLT 253
           V A    +L +  +++ G +L++++L   I RSI +P    +  + +IA GE DLTR L 
Sbjct: 181 VAAEFKTQLWNAGMFIAGIVLIMVLLLVTIVRSIVRPLRAAVGAMASIASGESDLTRTLE 240

Query: 254 VTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAV 313
             G DE+ ++   FN F  K+R+++ ++     ++  ++ +L   A+ A S++  Q Q +
Sbjct: 241 THGNDEITELGTHFNAFVAKLRNVVGQLQHSAVALGQASTDLGSDAEQAQSRSEQQSQQM 300

Query: 314 DTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTE 373
           D VA+A+N++    Q+VA++A  A      A   A QG+  I  +  Q++ L   + +  
Sbjct: 301 DLVATAVNEVTYGVQDVAKNAEHAASEMRDAESQAQQGQINIDNSLRQIEHLSSTIGQAV 360

Query: 374 QETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAT 433
           Q  Q LASE+  + +VLEVI  +AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA 
Sbjct: 361 QVMQSLASESTQIGSVLEVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQ 420

Query: 434 RTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILS 493
           RTQ ST EI+ +I +LQK + +  + +  + + S++T +QA QA Q L  I   ++ + S
Sbjct: 421 RTQKSTAEIQSMIERLQKHSDAAVKVIGDSSRSSQLTIEQANQAGQSLTSISQALRNLNS 480

Query: 494 FNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSLAV 553
            N  IA A+ QQ+   D+I +N+TQ A+ S   +  A Q  +AS  L    + L   L  
Sbjct: 481 LNASIASATLQQTHVVDDINQNVTQAAQLSQSTALAAEQSTSASLHLRGLSEELNTLLKQ 540

Query: 554 FKI 556
           F++
Sbjct: 541 FRV 543