Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  224 bits (571), Expect = 8e-63
 Identities = 133/344 (38%), Positives = 203/344 (59%), Gaps = 2/344 (0%)

Query: 213 LLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTN 272
           +++ I+ A +I R IT+P  ETLA +  IA G  DLT+ L VT  DEL  + Q       
Sbjct: 299 IILGIIAAVIITRQITRPLRETLAVVDRIASG--DLTQTLAVTRSDELGVLQQGIQRMGT 356

Query: 273 KIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQ 332
            +R +I  I      +  +A+EL+ V +  S+    Q    D VA+AM+++ A+  EVA+
Sbjct: 357 TLRELIGGIRDSVVQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMSATVAEVAR 416

Query: 333 SAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEV 392
           +A QA QAA +A++ A  G +++     Q++ L +++ R+      L  E+  +  V++V
Sbjct: 417 NAEQASQAASNADREARDGDKVVGEAIAQIERLANEVGRSVDAMTELEQESDKIGKVMDV 476

Query: 393 IRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKK 452
           I+ VAEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ ST EIE ++A LQ  
Sbjct: 477 IKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTVEIETLVAALQSG 536

Query: 453 AQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEI 512
            + VS  M  +++ +  +   + QA   L  I   + +I + NQ IA A+ +QS   +EI
Sbjct: 537 TRQVSSIMLNSRELTVSSVTLSRQAGTSLGSITQTVSSIQAMNQQIAAAAEEQSAVAEEI 596

Query: 513 TRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSLAVFKI 556
           +R++  + + S Q ++ + + AA+S +L   G  L   ++ F+I
Sbjct: 597 SRSIVNVRDVSEQTASASEETAASSVELARLGGQLQTMVSRFRI 640