Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  296 bits (758), Expect = 1e-84
 Identities = 177/567 (31%), Positives = 300/567 (52%), Gaps = 33/567 (5%)

Query: 13  SVSLRHLSIRNRLFLLTVVILVLL---AIPFAIMVKD---------YRHDLMLEKQVQTQ 60
           S+S+ + S+RN+L LL +V LVL+    + ++  V+          ++  L+ E+Q Q Q
Sbjct: 2   SISMSNYSLRNKLLLLAMVPLVLILTAVMSYSWQVESQALDDSVALFKEKLVNERQQQLQ 61

Query: 61  HLVESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPM 120
              + A  +++H       G +           A+  LR+G+  YF+I D Q A V H  
Sbjct: 62  EATQIALAVVDHQISLGQNGNIN---------DALRPLRFGSAGYFFIYDYQGANVFHAT 112

Query: 121 KPDLNGKDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKP 180
            P L G       DP G  + V +++  +R   G   Y +PKPG E  VDK+ Y      
Sbjct: 113 NPALEGTPQIGMTDPQGTKIVVGLIDAAKRGG-GFFNYVYPKPGVEGLVDKIGYAAPIPG 171

Query: 181 WGWIIGTGIYVDDVNALVMQRLSS---------ILVWVVGTLLVLIVLASL--IGRSITQ 229
             W++GTG Y+DD++A V     S         + ++++  +L  I L ++      + +
Sbjct: 172 KDWLLGTGAYLDDIDAAVDTYSQSARQAMWEKAVAIFMMSLVLAFITLIAIWSAAHRMVK 231

Query: 230 PCEETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVT 289
           P    + +L +IA+GEGDLT +L+V G+DE+A++  AFN F +K++ II+++   T  V 
Sbjct: 232 PIRAMVDSLNDIAKGEGDLTARLSVRGEDEIAELGIAFNQFVDKLQGIIRDVADTTGRVK 291

Query: 290 GSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAAS 349
            +A ++ +     +++    +   D V +A+ ++ ++  EVAQ+  Q  +A  +A    +
Sbjct: 292 QAAVDIDRQTSEMANQLNSHNNETDQVVTAITEMSSTAAEVAQNTTQVAEATQAATGDVA 351

Query: 350 QGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAI 409
           + +  +  +  ++ +L  Q+       Q L+ ++Q +++VL VI G+AEQTNLLALNAAI
Sbjct: 352 KAQACVDTSLAEISNLMSQVNDAAANIQSLSEQSQKINSVLSVIGGIAEQTNLLALNAAI 411

Query: 410 EAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRV 469
           EAARAGEQGRGFAVVADEVR LA+RTQAST EI +++  L +   S  ++M ++Q   + 
Sbjct: 412 EAARAGEQGRGFAVVADEVRNLASRTQASTLEINEMLTDLHRLVSSAVKTMDESQHSCQR 471

Query: 470 TQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQ 529
           + + +    + L  + + +  I   +  IA A+ +QS  T+EI RN+  I E        
Sbjct: 472 SVEASTAISESLGSVTSAVTAINDMSTQIAAAATEQSSVTEEINRNVYAIQEIVNALLVS 531

Query: 530 ANQVAAASEQLMENGQHLARSLAVFKI 556
           + +    S  +   G  L+  +  FK+
Sbjct: 532 SQEARTVSRTVSTEGAQLSNLVGQFKV 558