Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  345 bits (884), Expect = 3e-99
 Identities = 197/559 (35%), Positives = 314/559 (56%), Gaps = 10/559 (1%)

Query: 3   VISQGVMFMTSVSLRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHL 62
           ++S   + M    LR+ +I  R++++ ++ LV   + F   +++    L+ EK+ +   L
Sbjct: 1   MLSNIEVLMLGHYLRNYNISRRIWVMLLLSLVATLLMFVFALRNMDTVLVQEKEARLNAL 60

Query: 63  VESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKP 122
            + A +++  +  +A  G L+   A+  A  A+  LRY   +Y++  D Q  M+ HP   
Sbjct: 61  TDIAISIITDFQGKAQSGELSEADAKAKALSALDNLRYSGKEYYFTIDRQGMMIQHPFAK 120

Query: 123 DLNGKDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWG 182
            L   ++    DPNG  LF EM+ +TQ +   +V Y W +P A+ P  K+S VK F  WG
Sbjct: 121 KLVDTNVLGMADPNGVKLFAEMIRLTQNSDSALVNYMWNQPDADAPSPKMSVVKRFSEWG 180

Query: 183 WIIGTGIYVDDVNALVMQ-----RLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLAT 237
           WI+GTGIYVDD+ A   +      L  +LVW  G ++ L+++   I RS+T+P + TL  
Sbjct: 181 WIVGTGIYVDDIAAQKQEFTWQYLLVFLLVW--GPVMALLLM---ISRSVTEPLQRTLMA 235

Query: 238 LKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQ 297
            KNIA+GE +LT +L   G+DEL+Q++  FN F  +I+ ++  +    +     +  L+ 
Sbjct: 236 FKNIAEGEANLTLRLEERGRDELSQVSVYFNAFVGRIQSLVISVRDSVDHSRQLSSSLSN 295

Query: 298 VAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITL 357
           VA  A+       Q   +VA+A+NQ+ A+  EVA +A  A ++A +A+  A     ++T 
Sbjct: 296 VAHQAAHATNSMQQETQSVAAAINQMSATASEVAANAQLAAKSAKNADSQADSTNLVVTH 355

Query: 358 TSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQ 417
               ++ L  +L  T +  + L   +  +  +L+VI G+AEQTNLLALNAAIEAARAGE 
Sbjct: 356 AMGNVRQLSSELEETSEIAKALKVSSGEIGQILDVIVGIAEQTNLLALNAAIEAARAGEA 415

Query: 418 GRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQA 477
           GRGFAVVADEVRTLA+RTQ ST EI  II  ++     V+ S+ + +QQS  T  +  Q 
Sbjct: 416 GRGFAVVADEVRTLASRTQQSTQEINAIIEAIRGAVDKVNASVARARQQSDNTVDETAQV 475

Query: 478 QQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAAS 537
              L  I+  I  I   N  IA A+ +QS    E+  N+ +I E S +  +++  V   S
Sbjct: 476 MDALGLIKQAIGQINDMNLQIATATDEQSAVIAELNENINRINEISVENLSKSETVGHTS 535

Query: 538 EQLMENGQHLARSLAVFKI 556
           +++ E+ + +A+ +AVFK+
Sbjct: 536 DRIAEDSRQMAQLIAVFKV 554