Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 538 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  296 bits (757), Expect = 2e-84
 Identities = 183/543 (33%), Positives = 300/543 (55%), Gaps = 11/543 (2%)

Query: 16  LRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQ 75
           LR  +I  RL ++  +  +      A  +++  ++L  +K +Q    +++  +L+E + Q
Sbjct: 5   LRKFTILQRLIMMLALAALGTFCFAAFNIQEQYNNLEQQKWLQNDGQLDTVLSLVEVHRQ 64

Query: 76  QATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDP 135
           Q  QG ++   A+      I    YG   YF + DA+  ++         G+  +     
Sbjct: 65  QVQQGQISEADAKAEVASLINAAHYGNGGYFMVVDAEGQILA------AGGQSQKIGSRV 118

Query: 136 NGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDVN 195
           + K++ + +VN  +   + V   +   P   +   +++  + F PW WI+ TG +V DVN
Sbjct: 119 SDKSI-LNLVNEARTKGKAVATVETLNPDTGKTDTQLAEARQFAPWQWIVITGAFVADVN 177

Query: 196 ALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVT 255
           A +   + + L+ ++     L  L   +  SIT P    +  L++IA GEGDL  +L+  
Sbjct: 178 AAMETAIWNTLIIMMLISTPLFALFMALNHSITSPLNRAIEALEDIADGEGDLGARLSTA 237

Query: 256 GKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDT 315
           GKDE+A +A+AFN F  KI  +I++I P+ + +T  A  L+Q  ++A+  +   H+  ++
Sbjct: 238 GKDEVAHLAKAFNRFAEKIGKLIKDIKPMGDELTDDAQALSQAVETANRSSEQIHRETES 297

Query: 316 VASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQE 375
           VA+A++Q+ A++QE+A +  QA  +A      A + + ++T T  Q +SL D+L   E  
Sbjct: 298 VAAAIHQMLATSQEMAHNTQQAADSASKVKGQAQESQSLMTSTLKQTESLVDKLKAAELT 357

Query: 376 TQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRT 435
           T  L + +  + ++L+VIR +AEQTNLLALNAAIEAARAG  GRGFAVVADEVR LA RT
Sbjct: 358 TARLGAASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGAHGRGFAVVADEVRALANRT 417

Query: 436 QASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFN 495
           Q STNEI++II+++Q     V+ S +  Q  S   Q QA QA   ++ I + +  I   N
Sbjct: 418 QQSTNEIQKIISEIQAGIGDVTASNSANQTLSESLQSQARQAGASMDAILSLVAHINDIN 477

Query: 496 QHIAGASAQQSEATDEITRNLTQIAEHSTQA--SAQANQVAAASEQLMENGQHLARSLAV 553
             +A A+ +QS  T+EI RN++ I+E    A  S + N+ AA S Q +     LA++L  
Sbjct: 478 TQLASATEEQSLVTEEINRNISNISEQMQLAVESNEGNRHAAGSLQSISRA--LAKALGH 535

Query: 554 FKI 556
           FK+
Sbjct: 536 FKV 538