Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 561 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

 Score =  236 bits (601), Expect = 2e-66
 Identities = 160/583 (27%), Positives = 289/583 (49%), Gaps = 74/583 (12%)

Query: 16  LRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQ 75
           L +  I  R+++   +++V L     +++      +M ++  Q Q +  +A  +++    
Sbjct: 2   LTNTRIAIRIWIPVALMIVALIGSSVVVLNGEHKGMMRDRTAQVQSIATTALGIVKQAQS 61

Query: 76  QATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDP 135
           Q   G L+  +A+  A+ A+  + YG  DY ++ D++  ++++   P   G++     DP
Sbjct: 62  QQIAGKLSEAEAKTWARTALRAMTYGKGDYVFVYDSRGTVLVNAPDPSKEGENRMGLVDP 121

Query: 136 NGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDVN 195
           NG  +   +V+ T+     V+ Y WP+PG   P+ K+SY   F+PWGW+IG+G+Y+DDV 
Sbjct: 122 NGLPIIRALVDGTRNGGSVVLPYSWPRPGESAPIAKISYAVGFEPWGWLIGSGLYIDDVE 181

Query: 196 ALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLT-V 254
               +   +    +   LLV+ ++A  I  SIT+P  E  A +  +A  EGDL  ++   
Sbjct: 182 TAFAKEAFTAGATIAVILLVVCLIAYAIVHSITKPLVEMTARMVRLA--EGDLAVEIKGA 239

Query: 255 TGKDELAQIAQAFNLFTNK------------------------IRHII-----QEITPIT 285
           T +DE+  +A+A  +F                           +R  +     Q +  + 
Sbjct: 240 TRRDEIGAMARALEVFRRNGQENRALVDRQKQAEAEAVKERTAMRQALANDFEQGVGSLL 299

Query: 286 ESVTGSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSAN 345
            ++ G++++L   A + ++ A      VD VA+A     A+ Q VA +   AE+ + S +
Sbjct: 300 RTLVGASEDLNGAANALNASANATRTRVDEVATATEAASANVQTVASA---AEELSASIS 356

Query: 346 QAASQGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLAL 405
           +    G ++   +     ++RD   +T Q+ Q L +  + +  V+++I  +AEQTNLLAL
Sbjct: 357 EI---GHQVTRASQVTGDAVRD-AGKTSQQVQTLIAAAERIGEVVKLITTIAEQTNLLAL 412

Query: 406 NAAIEAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQ 465
           NA IEAARAG+ G+GFAVVA EV+TLA +T  +T+EI + IA LQ++ +S   +      
Sbjct: 413 NATIEAARAGDAGKGFAVVAGEVKTLANQTARATDEITRQIAALQEETRSSGTA------ 466

Query: 466 QSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQ------- 518
                          ++ I   I  I + ++ IA A  +Q  AT EI+RN+ +       
Sbjct: 467 ---------------ISSIAGTISEINAISEAIAAAVEEQGAATREISRNIQEASQGTSV 511

Query: 519 -------IAEHSTQASAQANQVAAASEQLMENGQHLARSLAVF 554
                  +++ ++QA   A+QV A++E L +  + +   +  F
Sbjct: 512 VSDNIASVSDSASQAGTAASQVHASAEALRDTAKTMHERINAF 554