Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 563 a.a., cache domain-containing protein from Rhodopseudomonas palustris CGA009

 Score =  289 bits (740), Expect = 2e-82
 Identities = 184/571 (32%), Positives = 301/571 (52%), Gaps = 46/571 (8%)

Query: 14  VSLRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHY 73
           +S  HL+I  R++LL  +  V L     +  ++    L  +KQ++ +HL E A + ++  
Sbjct: 2   LSRLHLTIGRRIYLLIGLGFVGLIGLTLLDSRELATGLQQQKQIELKHLAELAISFVKDE 61

Query: 74  AQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFK 133
              A +G ++T+QAQ  A+  IA+LRYG N+YF+I D Q  M+MHP+   L G+D  + K
Sbjct: 62  YDAAQRGEISTDQAQKRAEARIAKLRYGGNEYFFITDMQSKMLMHPIAKQLVGQDQSNAK 121

Query: 134 DPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDD 193
           DPNGK LFVEMVN  +R+  G V+Y WPKPG+++P  K+++V  F+PWGW+IGTG+Y+DD
Sbjct: 122 DPNGKMLFVEMVNTVRRSGSGFVDYVWPKPGSDKPQPKLTFVAGFEPWGWVIGTGVYIDD 181

Query: 194 VNALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLT 253
           ++A     +   L+     LL+ I ++  + R IT+P       +K++A G  D+  ++ 
Sbjct: 182 LDAQTWSAMQRSLIAATLVLLITIAVSVFMARRITRPILAMTGAMKDLAGGRIDI--EVP 239

Query: 254 VTGK-DELAQIAQAFNLF----------------------------TNKIRHIIQE-ITP 283
             G+ DE+ ++A+A  +F                             N++    +  I  
Sbjct: 240 GIGRHDEIGEMAEAVEVFKLNAQERRRLEGERQEIEARAEAERRAHANQVAEAFERAIGE 299

Query: 284 ITESVTGSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHS 343
           I E+V+ ++DEL   A + +  A    +    VA+A  +   + Q VA +    E+ + S
Sbjct: 300 IVETVSAASDELEASATTLTRTAEQSQELATAVAAASEEASTNVQSVASA---TEEMSSS 356

Query: 344 ANQAASQGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLL 403
            N+ + Q +E   +    +    DQ  +T    + LA     +  V+E+I  +A QTNLL
Sbjct: 357 VNEISRQVQESARIAHEAV----DQARQTNGRVEELAKAASRIGDVVELISNIAGQTNLL 412

Query: 404 ALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQT 463
           ALNA IEAARAGE GRGFAVVA EV+ LA +T  +T EI   I  +Q    +  QS+   
Sbjct: 413 ALNATIEAARAGEAGRGFAVVASEVKALAEQTAKATGEITLQINGIQ---AATDQSVAAI 469

Query: 464 QQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHS 523
           ++      + +E +  + + +E Q     +  Q I+    Q S  T +++ N+T +   +
Sbjct: 470 KEIGETIAKMSEISSTIASAVEEQ----GAATQEISRNVQQASLGTQQVSSNITDVQRGA 525

Query: 524 TQASAQANQVAAASEQLMENGQHLARSLAVF 554
           T+  A + QV AA++ L  +   L   ++ F
Sbjct: 526 TETGAASAQVLAAAKSLSGDSNRLKVEVSNF 556