Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., Methyl-accepting chemotaxis protein CtpM from Pseudomonas aeruginosa PA14

 Score =  286 bits (732), Expect = 1e-81
 Identities = 187/562 (33%), Positives = 303/562 (53%), Gaps = 28/562 (4%)

Query: 19  LSIRNRLFLLTVVILVLLAIPFA------------IMVKDYRHDLMLEKQVQTQHLVESA 66
           L++++++ LL +V ++L A+  +              VKD R  L+ +++ + +H V+ A
Sbjct: 3   LTLKSKVLLLAMVPVLLFALVLSGGAVLILKKQADTEVKDTRERLLGDRRAELEHYVQIA 62

Query: 67  YTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNG 126
              ++    ++  G L    A+  A   +++++YG + Y +  D+Q   +     P   G
Sbjct: 63  MGSIQAEYDRSANGDLN---ARAEAIARLSKVKYGKDGYIFGYDSQVVRLFRGDSPVDVG 119

Query: 127 KDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQP-VDKVSYVKLFKPWGWII 185
           K  R  +DP+G  L  E+V    +N    V Y  P PG E   V K+SY      W  +I
Sbjct: 120 KSFRDRRDPSGVYLNRELVEAG-KNGSHYVTYTSPLPGNESVMVPKLSYTLYLPKWDMVI 178

Query: 186 GTGIYVDDVNALVMQRLSSI----------LVWVVGTLLV-LIVLASLIGRSITQPCEET 234
           G+ I +D V A +++   +I          +V + G LLV L+V+   +  ++ +P  + 
Sbjct: 179 GSAINLDGVEAQLVEIKQAIDERIGTLIASIVAIAGVLLVVLLVIGLAVANAMLRPLHQI 238

Query: 235 LATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADE 294
              L +IA GEGDLTR+L VT  DEL ++A +FN F  KI  ++++I  +T  +    ++
Sbjct: 239 RQNLDDIAAGEGDLTRRLPVTSHDELGELAGSFNRFVEKIHGLVRQIAGMTGDLKQLVEQ 298

Query: 295 LTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREM 354
           ++  A+ +      Q    D VA+A+N++ A+  EVAQSA +A +AA   +      + +
Sbjct: 299 MSAQAERSEQAMERQRHETDQVATAINEMSAAAHEVAQSAQRAAEAAQQTDHEGQAAKRV 358

Query: 355 ITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARA 414
           +  +  ++ +L D++  +      L  + QS+ +VL VIR +AEQTNLLALNAAIEAARA
Sbjct: 359 VDGSIERIHALVDEIRDSGSSLDSLQQDVQSIVSVLGVIRSIAEQTNLLALNAAIEAARA 418

Query: 415 GEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQA 474
           GE GRGFAVVADEVR LA+RTQ ST EI+ +I +LQ+   +   +M ++ +    T  QA
Sbjct: 419 GEAGRGFAVVADEVRALASRTQQSTQEIQGMIDRLQQGTNAAVDAMRRSGEAGEGTSNQA 478

Query: 475 EQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVA 534
            QA   L+ I   I TI + N  IA A+ +Q+   +EI R++ QIA      + +A Q A
Sbjct: 479 NQAGDSLDAIAQLIATINAMNAQIASAAEEQTAVAEEINRSVHQIAGAVDSVADEAQQGA 538

Query: 535 AASEQLMENGQHLARSLAVFKI 556
             +  L + GQ L R +  F+I
Sbjct: 539 QTARSLAQLGQGLGRLVGQFRI 560