Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  220 bits (561), Expect = 1e-61
 Identities = 136/353 (38%), Positives = 207/353 (58%), Gaps = 2/353 (0%)

Query: 204 SILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVTGKDELAQI 263
           SI+V+++ TL VLI     I RSI +P +     +  I +   DLT +      DE+ QI
Sbjct: 270 SIVVFILITL-VLIGFTLAIIRSIMEPVQRISDAISRI-EATKDLTLRCDTKVDDEIGQI 327

Query: 264 AQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDTVASAMNQL 323
           A+ FN      + +I+E+    E V  S  EL++ +  AS     Q    D VA+A+ ++
Sbjct: 328 ARHFNSMVESFQSLIREVLTSVEVVNHSCQELSENSMRASEGVGRQLNETDMVATAITEM 387

Query: 324 HASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQETQVLASET 383
            A+  E+A +   A + A + +  A QG+  +  T  ++Q+L  QLT + Q    L  ++
Sbjct: 388 GATIDEIASNTELAAERAGNTHDNAQQGQVGVEHTIEKIQALAAQLTDSAQVVSELEKDS 447

Query: 384 QSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTNEIE 443
           +++ +VL+VIRG+AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ ST EI 
Sbjct: 448 ETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQESTEEIA 507

Query: 444 QIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASA 503
            II  LQ + +S+ Q M  TQ+Q   +  QA  A  +L +I A +  I+  +  IA A  
Sbjct: 508 GIIQTLQSRTRSIVQLMEATQRQGIESADQAASAGALLEQINADVTNIMDMSTQIAAAIE 567

Query: 504 QQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSLAVFKI 556
           +QS    E+ +N+  I + + +++  A++ A AS+ +    Q L +++++FKI
Sbjct: 568 EQSMVASEVNKNVVVIRDIAAESAQAADENAKASDDVKARTQVLYQAVSLFKI 620