Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  355 bits (910), Expect = e-102
 Identities = 195/540 (36%), Positives = 304/540 (56%)

Query: 17  RHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQQ 76
           R   I +RL  + ++ +V   I F   + +    L+ EKQ +   L +    ++  + + 
Sbjct: 9   RKFKIAHRLLFMLLLAIVATGIMFVFALANIEEVLVKEKQAKLSALSDVGEKVISQFYEA 68

Query: 77  ATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDPN 136
           +  G+++ E+A+  A  A+  LRY  N+YFW  D Q  MV H     L G ++   KDPN
Sbjct: 69  SQAGSMSEEEAKRNAIAALDALRYEGNEYFWTIDRQGIMVQHAFAKKLVGTNVLGMKDPN 128

Query: 137 GKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDVNA 196
           G  LF +MV  T  +   ++EY W +P A  P  K+S VK F PWGWI+GTGIYVDD+  
Sbjct: 129 GVRLFEKMVTGTANSDYALIEYMWNRPNASAPSPKMSVVKRFTPWGWIVGTGIYVDDIQE 188

Query: 197 LVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVTG 256
            +   +   L+  +   L +I++  +I RSI+ P  +T+A  +NIA+GEGDLT +L  +G
Sbjct: 189 EMQAFIYKYLLICIAVWLPVILILGVISRSISAPMADTIAAFENIARGEGDLTLRLEESG 248

Query: 257 KDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDTV 316
           +DEL Q+A +FN F  KI+ ++  ++         A+ L  ++  AS    +      +V
Sbjct: 249 RDELKQVAASFNEFVAKIQALVNSVSASVTHSRELAEGLADISAQASMVTANMQAETQSV 308

Query: 317 ASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQET 376
           A+A+N++  ++ EVA +A  A  +A SA+  A     ++     +++ L ++L  T  E 
Sbjct: 309 ATAINEMSMASSEVASNAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSNELEVTADEA 368

Query: 377 QVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRTQ 436
           Q L   +  +  +L+VI G+AEQTNLLALNAAIEAARAGE GRGFAVVADEVRTLA+RTQ
Sbjct: 369 QALQISSGKIGQILDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRTQ 428

Query: 437 ASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQ 496
            ST EI  II  ++    SV+ S+ + + QS  T  +  Q  + L  I++ I+ I   N 
Sbjct: 429 ESTQEINAIIEAIRASVDSVNASVARAKAQSEQTVGETSQVVEALQTIKSSIRQISDMNI 488

Query: 497 HIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSLAVFKI 556
            IA A+ +QS    E+  N+T+I + S +   ++ ++ + SEQ+      L   ++ FK+
Sbjct: 489 QIATATEEQSAVIAELNMNVTRINDISLENQQKSEEIGSTSEQIKSGSADLESLISTFKL 548