Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  300 bits (767), Expect = 1e-85
 Identities = 179/542 (33%), Positives = 288/542 (53%), Gaps = 2/542 (0%)

Query: 16  LRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQ 75
           LR  +I  RL L+ V+  +   +  +  + + R++L+ +K +Q    + +  ++++ + +
Sbjct: 5   LRRFTILQRLILMLVLAAIGTFVFASFSINEQRNNLIKQKWLQNDAQLSTLLSVIDTHYR 64

Query: 76  QATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDP 135
           Q+ Q  LT E AQ  A   + Q++YG + YF + DA   ++ +   PD  G         
Sbjct: 65  QSQQNILTPEDAQREAANLVNQIQYGESGYFLLFDADHTLLANGASPDQLGIKASKLTSQ 124

Query: 136 NGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDVN 195
            G     ++++    +       +   P   +  + +   + F  W W + T  Y+ DVN
Sbjct: 125 MGGNALDKLLDKAMASGIAKASMEMRNPITGEQEEALMEARTFPAWQWTLVTTSYMSDVN 184

Query: 196 ALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVT 255
              +  + + L  ++   + +     ++  SI+ P  + +  +K+IA+GEGDLT++L   
Sbjct: 185 DTTISVMYNYLGIMLLISVPIFAFFLILNHSISSPLNQAIDAMKDIAEGEGDLTKRLPTQ 244

Query: 256 GKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDT 315
           GKDE+  +A AFN F  KI  ++ ++ P+   +   AD L      +++     HQ   +
Sbjct: 245 GKDEVVALAIAFNNFVGKINKMVADLQPVGHDLNQDADRLFNAVAESNASVDHLHQETSS 304

Query: 316 VASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQE 375
           VA+A+NQ+ ++  E+A S  QA  AA+S  Q A   ++ +  T      L  +L   E  
Sbjct: 305 VATAINQMLSTTHEMASSTQQAADAANSVKQQAQDSKQQMDGTVENTHKLVQELKNAEGI 364

Query: 376 TQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRT 435
           TQ L   ++ + ++L+VIRG+A+QTNLLALNAAIEAARAG  GRGFAVVADEVR LA RT
Sbjct: 365 TQHLGVSSEQIGSILDVIRGIADQTNLLALNAAIEAARAGAHGRGFAVVADEVRALANRT 424

Query: 436 QASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFN 495
           Q STNEI++II  +Q    +V  S + TQ QS   QQQA+   + LN I   I  I   N
Sbjct: 425 QDSTNEIQKIITDIQNGVANVMHSNSDTQTQSVELQQQAQAVGESLNTILELIAHISDMN 484

Query: 496 QHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQV-AAASEQLMENGQHLARSLAVF 554
             +A A+ +QS  T+EI RN+  I E S + S +AN+    A+E L +  Q  A+ L  F
Sbjct: 485 TQLASATEEQSLVTEEINRNICSITELS-EVSVKANESNRMAAESLRQISQTSAKILGQF 543

Query: 555 KI 556
           K+
Sbjct: 544 KV 545