Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  283 bits (724), Expect = 1e-80
 Identities = 178/565 (31%), Positives = 289/565 (51%), Gaps = 41/565 (7%)

Query: 19  LSIRNRLFLLTVVILVL-----LAIPFAIM-------VKDYRHDLMLEKQVQTQHLVESA 66
           L ++N+L +  ++ L+L     ++I + +        +  ++  L  E++ Q +  V+ A
Sbjct: 4   LRMKNKLLVFALLPLILSFLFLVSITYNLESNSLEENMSTFKASLYSERKAQLKDQVDIA 63

Query: 67  YTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNG 126
             ++EH     T G +          +A+  +R+G   YF+I D       H +KP L G
Sbjct: 64  LDIVEHQLSLGTAGDVN---------KALRNVRFGTAGYFFIYDFDGFNRFHAVKPALEG 114

Query: 127 KDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIG 186
                  DPNGK + V +++   R+  G   Y + KPG    V K+ Y        WI+G
Sbjct: 115 TAQIGMTDPNGKKIVVGLIDAA-RSGDGFFNYDYSKPGVTGLVPKIGYAATVPGKDWILG 173

Query: 187 TGIYVDDVNALV---------------MQRLSSILVWVVGTLLVLIVLASLIGRSITQPC 231
           TG Y DD++A V               M  L   LV V  T +V++V A    + +  P 
Sbjct: 174 TGAYTDDIDAQVESYREVMTKHMNDKAMMILLFALVLVAITAVVMLVAA----QRMVNPI 229

Query: 232 EETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGS 291
              +  L++IA+GEGDLT++L V G DE+A + +AFN F +K++ II+++   T  V   
Sbjct: 230 HNMVQNLEDIAKGEGDLTKRLDVQGSDEIAMLGRAFNQFVDKLQGIIKDVARATVEVKSG 289

Query: 292 ADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQG 351
           AD ++    + + +    +   D V +A+ ++ A+  EVA S  Q  +A  +A Q     
Sbjct: 290 ADNISSQTAAMAQQLISHNNETDQVVTAITEMSATASEVAMSTTQVAEATQAATQDVGNA 349

Query: 352 REMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEA 411
           +E +  +  ++ +L  ++         L  ++Q +++VL VI G+AEQTNLLALNAAIEA
Sbjct: 350 QECVDSSLHEVSTLMAEIDMAAGHINSLNEQSQKINSVLSVIGGIAEQTNLLALNAAIEA 409

Query: 412 ARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQ 471
           ARAGEQGRGFAVVADEVR+LA+RTQAST EI +++++L         SM  +QQ    + 
Sbjct: 410 ARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSELHNLVSLAVSSMESSQQSCHRSV 469

Query: 472 QQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQAN 531
             +      L  + + + +I   +  IA A+ +QS  T+EI RN+  I E   +    +N
Sbjct: 470 TSSRAISDSLGAVTSAVTSINDMSTQIATAATEQSSVTEEINRNVFAIQEIVNELLQASN 529

Query: 532 QVAAASEQLMENGQHLARSLAVFKI 556
             +  S+ L   G++L   +  FK+
Sbjct: 530 SASDTSQGLANEGRNLDTLVGQFKV 554