Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  234 bits (597), Expect = 8e-66
 Identities = 188/630 (29%), Positives = 296/630 (46%), Gaps = 107/630 (16%)

Query: 10  FMTSVSLRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTL 69
           F  SV+LR ++      L T + L+ +       +   R D +  +Q + QHLV++A  L
Sbjct: 26  FEASVALRIIA------LATFIALLFMTAILGGFLPQVRSDALQARQQELQHLVQAALKL 79

Query: 70  LEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQ---PAMVMHPMKPDLNG 126
           +E    +A +G +  ++A+  A  A+ Q+RYG  DYFWIND +   P MVMHP  P L G
Sbjct: 80  VEGLDAKAGRGEIPLDEARRRAADALRQMRYGNGDYFWINDDRAPYPTMVMHPTAPVLEG 139

Query: 127 KDLR-----------------SFKDPNG-KALFVEMVNVTQRNQQGVVEYQWPKPG---- 164
           + L                  + + P G + LF   V+V  ++ +G+V Y WPKP     
Sbjct: 140 QTLDKPAYNRGTHWRAAPGAPATEYPGGNRNLFQAFVDVAHQHGEGLVAYMWPKPKQGGG 199

Query: 165 -AEQPVDKVSYVKLFKPWGWIIGTGIYVDDVNALVMQRLSSILVWVVGTLLVLIVLASLI 223
             +Q   K SY+  +KPWGWIIGTG+YVDD+     +  + +L      L V  VL  L+
Sbjct: 200 VTDQTYPKESYIARYKPWGWIIGTGVYVDDLEVAAGRLRNMVLAVTAAILAVGCVLTVLV 259

Query: 224 GRSITQPCEETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITP 283
            RS+  P    +A  + +A   GDL  Q   T + EL  + Q+       +R  I+E   
Sbjct: 260 TRSVRTPLHALVAYARAVA--AGDLDAQPRGTFRAELRGLKQSIASMVESLRMRIEE--- 314

Query: 284 ITESVTGSADELTQVAQSASSKAY------------DQHQA--------------VDT-- 315
              + T  A E  + AQ+A+++A               H+A               DT  
Sbjct: 315 -ARARTDEAAEHARRAQAATAEAEAARIRAEQARRDGMHEAAGMLEGIAAAIVDVADTVG 373

Query: 316 --VASAMNQLHASNQEVAQSAHQAEQ--------------AAHSANQAASQGREMITLTS 359
             V+ A     A    VA+S+H  E+              AA +A+ A ++ RE     +
Sbjct: 374 RQVSLAGGGADAQKTRVAESSHAMERMDAAVAGMAGGAAGAADTADNAQTKARE----GA 429

Query: 360 TQMQSLRDQLTRTEQ-------ETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAA 412
             +Q +++ + R E+           L+ +  S+  ++ VI  +A+QTNLLALNAAIEAA
Sbjct: 430 EGVQRVKEAVVRVEKGAASLHASMADLSRKADSIGGIMAVISDIADQTNLLALNAAIEAA 489

Query: 413 RAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQ-------KKAQSVSQSMTQTQQ 465
           RAG+ GRGFAVVADEVR LA +T  +T E+ + I  +Q       ++  +  +++TQ   
Sbjct: 490 RAGDAGRGFAVVADEVRKLAEKTMNATREVGEAIRAIQEGTAASARQVDAAVEAVTQANA 549

Query: 466 QSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQ 525
           Q+       ++  ++ + + AQ++ + +  Q  A  SA    +  +I    T I+E + Q
Sbjct: 550 QADTAGSSLDEIVRLASGVSAQVRAVATSGQEQAAVSADIVRSLGDI----TTISEDTAQ 605

Query: 526 ASAQANQVAAASEQLMENGQHLARSLAVFK 555
           A   A +   +   L    Q L   +A FK
Sbjct: 606 AMRDAER---SLGDLNTEAQRLGDLVARFK 632