Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  244 bits (624), Expect = 6e-69
 Identities = 155/490 (31%), Positives = 260/490 (53%), Gaps = 16/490 (3%)

Query: 69  LLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKD 128
           L  +Y Q   +G +   ++ +   Q +   +     + ++ DA+  + +HP    +    
Sbjct: 167 LFINYQQPNGRGLVGLAKSLDDMVQLLDSFKIEETGFVYLVDAKGEVKLHPDPSQIGKTS 226

Query: 129 LRSFKDPN--GKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIG 186
           L+S       G  L     N+     QG           E+     SY+       W + 
Sbjct: 227 LKSLYSAANIGSLLNRSDFNLIDTEIQG-----------EKTFVASSYIPSMD---WYLV 272

Query: 187 TGIYVDDVNALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEG 246
             +   +V AL+   +  IL+W +      I+LA ++  S+++P  +  A  ++I +GEG
Sbjct: 273 AQVPEAEVFALLRDAVYQILIWTLIIAAGFIMLAIVVAGSVSRPIAQVAAMFRDIGEGEG 332

Query: 247 DLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKA 306
           DL ++L V GKDE+AQ+AQ FN F +KI+  + E+   +E +  SA +++  AQ     +
Sbjct: 333 DLRQRLPVNGKDEIAQLAQGFNSFISKIQDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDS 392

Query: 307 YDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLR 366
           ++Q      V +A+N++ A+  E+A +A QA  AA  A+  ++ G+ ++T     +  L 
Sbjct: 393 HEQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLS 452

Query: 367 DQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVAD 426
             + +  +  + LA+ T+S+  +L+VIR ++EQTNLLALNAAIEAARAGE GRGFAVVAD
Sbjct: 453 HDVEQVGEVIESLATHTKSIGGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVAD 512

Query: 427 EVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEA 486
           EVR LA+RT ASTNE++ +I +LQ +A     +M Q++ +S       ++A Q L  I  
Sbjct: 513 EVRNLASRTAASTNEVQGMIDKLQSEASRAVSAMAQSRARSHEGVTAVDEASQSLVGISK 572

Query: 487 QIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQH 546
           +I  I   N  +A A+ +QS   ++I RN+T+I + + + ++ A   A AS  L +    
Sbjct: 573 RIGLISDMNIQVAAATEEQSTVVEDINRNVTEINDITQRTASTAQAAAQASLALNQLAHR 632

Query: 547 LARSLAVFKI 556
           L   +A FK+
Sbjct: 633 LDTLVAKFKV 642