Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  323 bits (827), Expect = 1e-92
 Identities = 188/542 (34%), Positives = 304/542 (56%), Gaps = 2/542 (0%)

Query: 16  LRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQ 75
           LR  +I  RL ++ V+  +      +  +K+   +L+ +K +Q    + S  ++++ Y Q
Sbjct: 5   LRQFTILKRLMMMLVMAAIGTVCFASFSIKEQYSNLIEQKWLQIDGQLGSILSVIDVYRQ 64

Query: 76  QATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDP 135
            A  G +  ++AQ  A   I Q RY    YF + D    ++ H     + G   ++F  P
Sbjct: 65  DAASGKMREQEAQKAAASLINQTRYAGVGYFILIDDNNQILAHGESASMIGTSAQNFTLP 124

Query: 136 NGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDVN 195
           NG      +++  ++N +  +EY    P ++   DK++  + +  WGW + TG Y+ DV 
Sbjct: 125 NGTNPLTTLLSQARQNGKSTLEYPIANPVSKIVEDKLAEARYYPQWGWTLITGAYLSDVK 184

Query: 196 ALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVT 255
             + + +   L+ +    + +     ++  SIT P  + +  L++IAQGEGDL+++L+  
Sbjct: 185 ESLYEVMVDYLIIMFLISVPIFAFFLVLNHSITSPLNDAIEALEDIAQGEGDLSQRLSTQ 244

Query: 256 GKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDT 315
           GKDE+A +A AFNLF  KI  ++  + P+ +S+   A  L    + ++  A   H+   +
Sbjct: 245 GKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESNQSAEHIHRETGS 304

Query: 316 VASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQE 375
           VA+A+NQ+ ++  E+A +  QA  AA S    A Q + +I  T    + L  +L  +E  
Sbjct: 305 VATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTEKLVQELKASEAI 364

Query: 376 TQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRT 435
           TQ L   +  + ++L+VIR +AEQTNLLALNAAIEAARAG  GRGFAVVADEVR LA RT
Sbjct: 365 TQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRT 424

Query: 436 QASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFN 495
           Q STNEI++II+++Q    SV QS +QTQ+QS   Q +A++A Q +  I   I  I   N
Sbjct: 425 QDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAAILELIAHISDMN 484

Query: 496 QHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQV-AAASEQLMENGQHLARSLAVF 554
             +A A+ +QS  T+EI RN+  I+E  T+ S +AN+  + A++ L +  Q ++ +L  F
Sbjct: 485 TQLASATEEQSLVTEEINRNICNISE-LTEVSVKANESNSRAAQSLQDISQDMSHTLGQF 543

Query: 555 KI 556
           KI
Sbjct: 544 KI 545