Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  301 bits (771), Expect = 4e-86
 Identities = 172/564 (30%), Positives = 309/564 (54%), Gaps = 33/564 (5%)

Query: 16  LRHLSIRNRLFLLTV-----VILVLLAIPFAIM-------VKDYRHDLMLEKQVQTQHLV 63
           + +LS+RN+L LL++      +LVL+ + + +        V  +R  L+ E++ Q +   
Sbjct: 1   MSNLSLRNKLLLLSLFPLIFTLLVLITLSYYVEQESLAEEVVTFRTKLVGERKQQIKEAT 60

Query: 64  ESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPD 123
           E A  ++ +      +G +          QA+  +R+G+  YF++ D+Q   + H + P+
Sbjct: 61  EIASGIVNYQLSLKDKGNVN---------QALRDIRFGSAGYFFMYDSQGKNIFHALMPN 111

Query: 124 LNGKDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGW 183
           L G++     DP G  + V +++  +R   G   Y + KP   + ++K+S+V +     W
Sbjct: 112 LEGQNKIDMTDPRGTKIIVGLLDAAKRGD-GNFSYYYQKPNTNEQIEKISFVMMVPGTDW 170

Query: 184 IIGTGIYVDDVNALVMQRLSSILVWVVGTLLVLIVLASLI-----------GRSITQPCE 232
           ++GTG Y+DD+ A+V     ++   +    L+++++A ++              +  P +
Sbjct: 171 MLGTGAYIDDIEAVVEDYRQTVTEQMAEKSLMILLIALVLTGATAFVIMVAAHRMVVPIK 230

Query: 233 ETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSA 292
                L +IA+GEGDLT++L+V G+DE+AQ+ +AFNLF +K++HII ++   T  V  +A
Sbjct: 231 NMADNLNDIAKGEGDLTKRLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAA 290

Query: 293 DELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGR 352
           + +    +  SS+    +   D V +A+ ++ ++  EVAQ+  Q  +A  +A    +  +
Sbjct: 291 NAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQ 350

Query: 353 EMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAA 412
             +  +  ++ +L +Q+       + L+ ++Q +++VL VI G+AEQTNLLALNAAIEAA
Sbjct: 351 RCVDASLEEIAALMEQINHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAA 410

Query: 413 RAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQ 472
           RAGEQGRGFAVVADEVR+LA+RTQAST EI ++++ L K      ++M ++QQ    + +
Sbjct: 411 RAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSALHKLVSQAVKTMDESQQSCVRSVE 470

Query: 473 QAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQ 532
            +    + L  + + +  I   +  IA A+ +QS  T+EI RN+  I E   +    +  
Sbjct: 471 SSRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHSSEH 530

Query: 533 VAAASEQLMENGQHLARSLAVFKI 556
            A  S+ + + G +L   +  FKI
Sbjct: 531 AARVSQTVSQEGTNLGNLVGQFKI 554