Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  236 bits (602), Expect = 2e-66
 Identities = 177/601 (29%), Positives = 272/601 (45%), Gaps = 90/601 (14%)

Query: 24  RLFLLT--VVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQQATQGT 81
           RL LL   +V L +L I F  ++      L+  +    ++++++   LL+ Y  +  +G 
Sbjct: 26  RLLLLVGGIVALFVLTI-FVGILPTVEQRLLAARGDALRNMIQNVDKLLQEYDARVQKGE 84

Query: 82  LTTEQAQNTAKQAIAQLRYGANDYFWINDA---QPAMVMHPMKPDLNGKDLRSFKD---- 134
            T E+    A   I  +RYG NDYFWIND     P M+MHP+   L GK L S       
Sbjct: 85  FTREEGMKRAALRIGSMRYGNNDYFWINDTGTPYPTMIMHPVATQLVGKVLDSPNYQRAT 144

Query: 135 -------------PNGKALFVEMVNVTQRNQQGVVEYQWPKP-----GAEQPVDKVSYVK 176
                        P GK LF   V+V QRN  G+V Y WPKP      + +  +K SYV 
Sbjct: 145 GWRTAPGEDFNAYPAGKNLFQAFVDVVQRNGSGLVSYAWPKPLPGGGASSELYNKESYVT 204

Query: 177 LFKPWGWIIGTGIYVDDVNALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLA 236
           LF+PWGWI+GTG+YVDD+   V      +L    G LL++     ++ RSI +P +   +
Sbjct: 205 LFRPWGWIVGTGVYVDDIERDVTALRLRVLTLSGGILLLVCAFGWILIRSIRRPLDSLAS 264

Query: 237 TLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQE---------------- 280
             + +A  +GDL   ++ +   E  ++  +       +R  I E                
Sbjct: 265 YARKVA--DGDLGAHVSGSFIAEFGELKHSLETMVEALRTKIAEAQEKTDEASIMARRAE 322

Query: 281 ---------------------------ITPITESVTGSADELTQVAQSASSKAYDQHQAV 313
                                      +  I   V  +A  LT + + A+  A  Q   V
Sbjct: 323 EQTHAAEAAREEAERARSEGMVDAANQLEAIVRDVGRAASALTGLVRVAAEGAGRQRARV 382

Query: 314 DTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTE 373
              + +M +++A+  +VA++A QA   + +A   A QG   +      +  +  +     
Sbjct: 383 GETSVSMEEMNATVLDVARNAGQAATTSEAARAKAQQGAGGVEQVVASVAQVEREAASLR 442

Query: 374 QETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAT 433
           +    L+    ++  ++ VI  +A+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA 
Sbjct: 443 ESMGALSKRADAIGQIMSVISDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAE 502

Query: 434 RTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQ---QMLNEIEAQIKT 490
           +T  +T E++  I  +Q   Q   +S       SR   + AE A+   + L EI    + 
Sbjct: 503 KTMNATKEVDSAIRGIQ---QGTGESSRNVDAASRAVGEAAEHARAAGESLGEIVRLAEQ 559

Query: 491 ILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARS 550
           +    + IA AS +QS +++ I   L  +A            VA  + + M++  H  R 
Sbjct: 560 VSDQIRSIATASEEQSSSSESIAHALDGVA-----------GVADDTSRAMDDAMHSLRD 608

Query: 551 L 551
           L
Sbjct: 609 L 609



 Score = 30.0 bits (66), Expect = 3e-04
 Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 22/169 (13%)

Query: 385 SVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRTQA-STNEIE 443
           S+  ++E +R    +       A+I A RA EQ        +E     +     + N++E
Sbjct: 292 SLETMVEALRTKIAEAQEKTDEASIMARRAEEQTHAAEAAREEAERARSEGMVDAANQLE 351

Query: 444 QIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASA 503
            I+  + + A +++  +       RV  + A + +  + E    ++              
Sbjct: 352 AIVRDVGRAASALTGLV-------RVAAEGAGRQRARVGETSVSME-------------- 390

Query: 504 QQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSLA 552
           + +    ++ RN  Q A  S  A A+A Q A   EQ++ +   + R  A
Sbjct: 391 EMNATVLDVARNAGQAATTSEAARAKAQQGAGGVEQVVASVAQVEREAA 439