Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., chemotaxis protein from Burkholderia phytofirmans PsJN

 Score =  233 bits (595), Expect = 1e-65
 Identities = 167/542 (30%), Positives = 265/542 (48%), Gaps = 35/542 (6%)

Query: 20  SIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQQATQ 79
           S   +L+L  VV LV L           R   + E++    ++     +++  YA  A  
Sbjct: 5   SFTQKLWLPLVVSLVALLAVSVSAAWLSRQTRIEERKNDLVNVAHVGLSIVTEYAALAQS 64

Query: 80  GTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDPNGKA 139
           G L+   A+  A + +  +RYG + YF + D+ P MVMH MKP LNGKDL    D +G+ 
Sbjct: 65  GALSEADARRQALERLRGIRYGEDGYFLVIDSTPRMVMHAMKPALNGKDLAGTADADGRH 124

Query: 140 LFVEMVNVTQRNQQGVVEYQWPKPG--AEQPVDKVSYVKLFKPWGWIIGTGIYVDDVNAL 197
            +V    V Q+   G V+Y +P P       V K+ YV  + PW WII TG YVDD++A 
Sbjct: 125 HYVTFAAVAQKPNGGFVDYVFPHPQDPPSAAVGKIGYVVRYAPWDWIIATGAYVDDIDAA 184

Query: 198 VMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGE---GDLTRQLTV 254
             + L  +        L+L  L SL  RSI +        +  +A GE   G+L   + +
Sbjct: 185 FKESLYFVGGIFAVLALLLSALVSLTNRSIRRTIGGDPVYVAQVA-GEITRGNLAIPINL 243

Query: 255 TGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVD 314
              DE + +   + L  + + H I++I    + V   A E+       S++  +Q  +++
Sbjct: 244 RHGDESSLLHTVY-LMRDALAHTIEQIKGAADKVATGAREIAGGNTDLSARTENQAASLE 302

Query: 315 TVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQ 374
             A++M Q+ A  ++ A++A  A Q    A Q  ++G EM     + MQ +         
Sbjct: 303 ETAASMEQMTAMVRQTAENAQTASQLTAGAEQIVNRGGEMAAQAVSTMQEI--------- 353

Query: 375 ETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATR 434
                ++E+  +  ++ VI G+A QTN+LALNAA+EAARAG+ GRGFAVVA EVRTLA R
Sbjct: 354 -----STESHKMVEIISVIEGIAFQTNILALNAAVEAARAGDAGRGFAVVAGEVRTLAQR 408

Query: 435 TQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSF 494
           + A+  EI  +I+    K  + ++ + QT      T   A +A          I  +   
Sbjct: 409 SAAAAKEIRALISHAVDKVGTGAEFVGQT----GATIHSAREA----------IAKVSGV 454

Query: 495 NQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSLAVF 554
            + IA A+A+QS   D++   + Q+   + Q +A   Q AA ++ L E  + L  S++ F
Sbjct: 455 MRDIAAAAAEQSAGIDQVGDAVAQMDSVTQQNAALVEQAAAVAQTLTEQARLLQVSISQF 514

Query: 555 KI 556
            +
Sbjct: 515 NL 516