Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  256 bits (655), Expect = 1e-72
 Identities = 147/356 (41%), Positives = 213/356 (59%), Gaps = 1/356 (0%)

Query: 201 RLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVTGKDEL 260
           RL  I++ V+  LL+   +A  I +SIT+P  ET   L +IA+GEGDLTR++ V  KDE+
Sbjct: 280 RLKLIMIGVIA-LLIGTAIAWFIAKSITRPIAETTDALNDIAEGEGDLTRRIEVKSKDEM 338

Query: 261 AQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDTVASAM 320
           AQ+AQAFN F  KI   + +++  T  +  SA+E++ +       A  QH   + VA+AM
Sbjct: 339 AQLAQAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITHETQQMANRQHLETEQVATAM 398

Query: 321 NQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQETQVLA 380
           N++ A+ QEVA +A  A  AA  A+++  QG+ ++    + +  L D++ +       L 
Sbjct: 399 NEMAATVQEVAHNATDAADAATHASESTEQGKLLVEKVISTISLLADEIAQAANAINELE 458

Query: 381 SETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTN 440
             T  + +VL VIR +A+QTNLLALNAAIEAARAGEQGRGFAVVADEVRTLA+RTQAST 
Sbjct: 459 RNTTQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTT 518

Query: 441 EIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAG 500
           EI+Q+I  LQ+ A++   SM  +   ++       +A   L  I   + TI   N  IA 
Sbjct: 519 EIQQMIETLQQSAKATVSSMNTSTATTQSCVSLVHEAGSALEAITQAVSTISQMNIQIAS 578

Query: 501 ASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSLAVFKI 556
           A+ +Q   + EI +N+  I + +T A+  A Q A A ++L +    L   L+ FKI
Sbjct: 579 AANEQCAVSAEINKNVNNINDIATNATESAMQTARAGDELAQLSMRLTTLLSQFKI 634