Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  301 bits (772), Expect = 3e-86
 Identities = 172/564 (30%), Positives = 309/564 (54%), Gaps = 28/564 (4%)

Query: 11  MTSVSLRHLSIRNRLFLLTVVILVLLAIPFAIM-------VKDYRHDLMLEKQVQTQHLV 63
           M++ SLR+  +   LF L +  +VL+ + + +        V  +R  L+ E++ Q +   
Sbjct: 1   MSNFSLRNKLLLLALFPLILTFIVLMTVSYHVEQSALADEVTTFREKLIGERKTQIKEAT 60

Query: 64  ESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPD 123
           + A  ++++      QG +          QA+  +R+G++ YF++ D+Q   + H + P+
Sbjct: 61  QIAAGIVQYQLSLKEQGNVN---------QALRDIRFGSSGYFFLYDSQGKNLFHAVMPN 111

Query: 124 LNGKDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGW 183
           L G++     DP G  + V ++N   +N  G   + + KP   + ++K+ Y  +     W
Sbjct: 112 LEGQNKIDMTDPRGTKIIVGLLNAA-KNGDGNFSFYFQKPNTNEQIEKIGYSMMIPGTDW 170

Query: 184 IIGTGIYVDDVNALVMQRLSSILVWVV----GTLLVLIVLASLIGRSITQPCEETLATLK 239
           ++GTG Y+DD++A+V    +++   ++      LL+ ++LA++    I    +  +  +K
Sbjct: 171 MLGTGAYIDDIDAVVEDYRTTVTEQMIDKSYAILLIALLLAAITAPVILVTAQRMVTPIK 230

Query: 240 N-------IAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSA 292
           N       IA+GEGDLT++L V G DE+AQ+ ++FNLF +K++ II ++   T  V  +A
Sbjct: 231 NMADNLNDIAKGEGDLTKRLAVKGDDEIAQLGRSFNLFVDKLQTIIGDVAHATAKVKTAA 290

Query: 293 DELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGR 352
           + +    +  S +    +   D V +A+ ++ A+  EVAQ+  Q  +A H+A    +  +
Sbjct: 291 NAIHDQTKVMSRQLISHNNETDQVVTAITEMSATASEVAQNTTQVAEATHAATGDVANAQ 350

Query: 353 EMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAA 412
             +  +  ++ +L  Q+       Q L+ ++Q +++VL VI G+AEQTNLLALNAAIEAA
Sbjct: 351 RCVDASLEEISALMAQINNAASNIQSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAA 410

Query: 413 RAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQ 472
           RAGEQGRGFAVVADEVR LA+RTQ+ST EI +++++L K      ++M ++QQ    +  
Sbjct: 411 RAGEQGRGFAVVADEVRNLASRTQSSTLEINEMLSELHKLVSLAVKTMEESQQSCIRSVD 470

Query: 473 QAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQ 532
            +    + L  + + +  I   +  IA A+ +QS  T+EI RN+  I E   +    + +
Sbjct: 471 SSRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVFAIQEIVNELLHSSEE 530

Query: 533 VAAASEQLMENGQHLARSLAVFKI 556
            A+ S+ + + G +L + +  FKI
Sbjct: 531 AASVSQTVSQEGLNLGKLVGQFKI 554