Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  303 bits (775), Expect = 2e-86
 Identities = 174/564 (30%), Positives = 307/564 (54%), Gaps = 28/564 (4%)

Query: 11  MTSVSLRHLSIRNRLFLLTVVILVLLAIPFAIM-------VKDYRHDLMLEKQVQTQHLV 63
           M+++SLR+  +   LF L + +LVL+ + + +        V  +R  L+ E++ Q +   
Sbjct: 1   MSNLSLRNKLLLLSLFPLILTLLVLMTVSYYVEQESLAEEVVTFRTKLVGERKQQIKEAT 60

Query: 64  ESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPD 123
           E A  ++++      QG +          QA+  +R+G+  YF+I D+Q   + H + P+
Sbjct: 61  EIAAGIVQYQLSLKDQGNVN---------QALRDIRFGSAGYFFIYDSQGKNIFHALMPN 111

Query: 124 LNGKDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGW 183
           L G++     DP G  + V +++  +R   G   Y + KP   + ++K+SYV +     W
Sbjct: 112 LEGQNKIDMTDPRGTKIIVGLLDAAKRGD-GNFSYYYQKPNTNEQIEKISYVMMVPGTDW 170

Query: 184 IIGTGIYVDDVNALVMQRLSSILVWVVGTLLVLIVLASLI-----------GRSITQPCE 232
           ++GTG Y+DD+ A+V     ++   +     +++++A ++              +  P +
Sbjct: 171 MLGTGAYIDDIEAVVEDYRQTVTEQMADKSFMILLIALVLTGITAFIIMVAAHRMVVPIK 230

Query: 233 ETLATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSA 292
               +L +IA+GEGDLT++L+V G+DE+AQ+ QAFNLF +K++ II ++   T  V  +A
Sbjct: 231 NMADSLNDIAKGEGDLTKRLSVKGEDEIAQLGQAFNLFVDKLQTIIGDVANATAKVKSAA 290

Query: 293 DELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGR 352
           + +    +  SS+    +   D V +A+ ++ ++  EVAQ+  Q  +A  +A    +  +
Sbjct: 291 NAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQ 350

Query: 353 EMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAA 412
             +  +  ++  L  Q+       + L+ ++Q +++VL VI G+AEQTNLLALNAAIEAA
Sbjct: 351 RCVDASLEEIAGLMSQINNAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAA 410

Query: 413 RAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQ 472
           RAGEQGRGFAVVADEVR LA+RTQAST EI +++++L K      ++M ++QQ    +  
Sbjct: 411 RAGEQGRGFAVVADEVRNLASRTQASTLEINEMLSELHKLVSVAVKTMDESQQSCVRSVD 470

Query: 473 QAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQ 532
            +    + L  + + +  I   +  IA A+ +QS  T+EI RN+  I E   +    +  
Sbjct: 471 SSRAISESLGSVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHSSED 530

Query: 533 VAAASEQLMENGQHLARSLAVFKI 556
            A  S+ + + G +L + +  FKI
Sbjct: 531 AAKVSQTVSQEGINLGKLVGQFKI 554