Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  284 bits (726), Expect = 7e-81
 Identities = 181/546 (33%), Positives = 294/546 (53%), Gaps = 21/546 (3%)

Query: 16  LRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQ 75
           L  + +  +L L  +  L+   I   + V   + +LM E++ +   ++  A + +     
Sbjct: 4   LADIPVSRKLALQLITALIGALILLTLSVTTLKSNLMAEREARLNAVLSLALSRI----- 58

Query: 76  QATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDP 135
           QA Q  L  EQAQ  AK+ +  +R+  ++Y ++ D    +++HP+KP+L  + + +    
Sbjct: 59  QALQQNLPLEQAQQAAKEMLNNMRFDGDNYLFVIDETRHIIVHPVKPELVSQQMGN---- 114

Query: 136 NG-KALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDV 194
           NG +  +  MV + +  QQGV++Y W   G  +   K+S V  FKPWGWI+G+GI + D+
Sbjct: 115 NGAEQYWFSMVELGRNGQQGVLQYPWVT-GNGKKAQKMSLVMGFKPWGWILGSGILLQDI 173

Query: 195 NALVMQRLSSILVWVVGTLLVLIVLASLIG----RSITQPCEETLATLKNIAQGEGDLTR 250
              +        V + GT L+LI+L + +G    RSI QP ++    ++ IA G  +LT 
Sbjct: 174 ENTIWHEY----VLMGGTTLILILLMAALGYIISRSIVQPLDQVNNAMQIIATG--NLTP 227

Query: 251 QLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQH 310
           QL VTGKDELA +A   N     IR  + E     ++V+ +A  +   A+  +    +Q 
Sbjct: 228 QLAVTGKDELAALAHNINQSMASIRTALAEANHSADNVSQAASRIASTAEETNQAVNNQR 287

Query: 311 QAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLT 370
             +  +A+AMN++ A+  +VA +A    +    A + A  G + +  +   + +L  ++ 
Sbjct: 288 DQLAQLATAMNEMSATIADVANNAESTAKDTKEATREAGLGDKDVHASVDGIHALAKEVE 347

Query: 371 RTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRT 430
           +  Q+   L  E   +S V  VI  +++QTNLLALNAAIEAARAGEQGRGFAVVADEVR 
Sbjct: 348 QATQQVNKLKEEIMQISEVTAVISAISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRQ 407

Query: 431 LATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKT 490
           LA+RT+ ST EI+  I+ LQ++A S + +M  ++  +  +  Q+ +A   L+ I   IK 
Sbjct: 408 LASRTRQSTEEIQNTISLLQQRAVSAANAMDTSRDLAEKSVDQSTKAGNDLSLIVTHIKH 467

Query: 491 ILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARS 550
           +      IA A+ +QS   +E+ RN+  I   + + S  A  +A  SE L E   +L   
Sbjct: 468 VSDMATQIATAAEEQSAVAEEMNRNVCGINSSALEVSESATYLAQESESLAELSLNLNNK 527

Query: 551 LAVFKI 556
           LA FK+
Sbjct: 528 LAAFKL 533