Pairwise Alignments

Query, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  318 bits (814), Expect = 4e-91
 Identities = 189/542 (34%), Positives = 301/542 (55%), Gaps = 2/542 (0%)

Query: 16  LRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQ 75
           LR  +I  RL ++ V+  +      +  +K+   +L+ +K  Q    + S  ++++ + Q
Sbjct: 5   LRRFTILQRLMMMLVMAAIGTVCFASFSIKEQYSNLIEQKWQQIDGQLGSLLSVIDIHRQ 64

Query: 76  QATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDP 135
            A  G L+  +AQ  A   I Q RY    YF + D    ++ H  + DL G    +FK  
Sbjct: 65  DALSGKLSEAEAQQAAANLIDQTRYAGVGYFIVIDDNNQILAHGERSDLIGTSALNFKLQ 124

Query: 136 NGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDVN 195
           NG      M+ + ++N + ++EY    P ++   DK+   + +  WGW + TG Y+ DV 
Sbjct: 125 NGTNPLATMLPLARQNGKTMLEYPIANPVSKNIEDKLVEARYYPEWGWTLITGAYLSDVK 184

Query: 196 ALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVT 255
             +   +   L+ +    + +     ++  SIT P  + +  L++IAQGEGDL+++L+  
Sbjct: 185 QSLKAVIIDYLIIMFLISVPIFAFFLVLNHSITSPLNDAIDALEDIAQGEGDLSQRLSTQ 244

Query: 256 GKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQAVDT 315
           GKDE+A +A AFNLF  KI  ++  + P+ +S+   A +L    + ++  A   H+   +
Sbjct: 245 GKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKQLMLAVEESNQSAEHIHRETGS 304

Query: 316 VASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQE 375
           VA+A+NQ+ ++  E+A +  QA  AA+S    A Q + +I  T    + L  +L  +E  
Sbjct: 305 VATAVNQMLSTTHEMASNTQQAADAANSVKNQAQQSQAVIDDTVRDTEKLVQELRASEVI 364

Query: 376 TQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATRT 435
           TQ L   +  + ++L+VIR +AEQTNLLALNAAIEAARAG  GRGFAVVADEVR LA RT
Sbjct: 365 TQKLGQSSAQIGSILDVIRSIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRALANRT 424

Query: 436 QASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSFN 495
           Q STNEI++II+ +Q    SV +S +QTQ QS   Q +A +A   +  I   I  I   N
Sbjct: 425 QDSTNEIQKIISDIQMGVNSVMKSNSQTQTQSDELQAKAREAGNAMAAILQLIAHISDMN 484

Query: 496 QHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQ-VAAASEQLMENGQHLARSLAVF 554
             +A A+ +QS  T+EI RN+  I+E  T+ S +AN+  + A++ L +  Q ++ +L  F
Sbjct: 485 TQLASATEEQSLVTEEINRNICNISE-LTEVSVKANEGNSRAAQSLQDISQDMSHTLGQF 543

Query: 555 KI 556
           KI
Sbjct: 544 KI 545