Pairwise Alignments

Query, 445 a.a., lysine:cadaverine antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., histidine permease (from data) from Pseudomonas fluorescens FW300-N2E3

 Score = 80.5 bits (197), Expect = 1e-19
 Identities = 83/358 (23%), Positives = 150/358 (41%), Gaps = 35/358 (9%)

Query: 3   SNAKKIGLIA--CTGVVAGNMMGSGIAL-LPSTLASVGSISIYSWLICIVGALSLAFVFA 59
           +N  K GL A     +  G+ +G+G+     S +   G   + ++LI       +     
Sbjct: 5   ANGLKRGLSARHIRFMALGSAIGTGLFYGSASAIQMAGPAVLLAYLIGGAAVFMVMRALG 64

Query: 60  RLATKNPQEGGPIAYAGE-VSPVFGFQTGVLYYHANWIGNLAIAITGVSYLSVFFPVLNN 118
            +A  NP  G    YA   + P+ GF  G  Y     I  +A       Y+  +FP ++ 
Sbjct: 65  EMAVHNPVAGSFGQYASTYLGPMAGFILGWTYAFEMVIVGMADVTAFGIYMGFWFPEVSR 124

Query: 119 PIPAGLATIASVWLFTLVNLLGGS-------------WVSRLCTIGLVLILIPVVGTALF 165
            I          W+  +V+++GG              W+S L    +V +++   G  LF
Sbjct: 125 WI----------WVLGVVSIVGGLNLCNVKVFGEMEFWLSLLKVAAIVAMILGGFGIMLF 174

Query: 166 GWTHFD------SALYSQNWNVSAGSDGHAVITAVLICLWSFVGVESAAVSSGMVENPKR 219
           G +         S L++Q   +  G  G  +I +  + +++F G+E   V++G  ++P+ 
Sbjct: 175 GISTAPGQVTDISNLWTQGGFMPNGMGG--LIASFAVVMFAFGGIEIIGVTAGEAKDPQH 232

Query: 220 TVPLATMLGTGLAGLIYVLSTQMISGMFPASEVAASGAPFALATTALFGSWTAPFVSAFT 279
            +P A         L YVL+  ++  +FP  ++ + G+PF      L  S  A  ++   
Sbjct: 233 VLPRAINAVPLRILLFYVLTMLVLMSIFPWQQIGSQGSPFVQIFDKLGISSAATILNIVV 292

Query: 280 ALACFTSLGSWMMLVGEAGKRAANDGNFPKVFGETDRNGVPKKGLLIASSMMTLLMLV 337
             A  +++ S +   G      A  G+ PK F    RNGVP   +++ S  + L +L+
Sbjct: 293 ITAAISAINSDIFGAGRMMFGLAQQGHAPKGFAHLSRNGVPWMTVVVMSVALLLGVLL 350