Pairwise Alignments

Query, 445 a.a., lysine:cadaverine antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., putrescine transporter (RefSeq) from Shewanella amazonensis SB2B

 Score =  231 bits (588), Expect = 5e-65
 Identities = 137/371 (36%), Positives = 204/371 (54%), Gaps = 6/371 (1%)

Query: 1   MSSNAKKIGLIACTGVVAGNMMGSGIALLPSTLASVGSISIYSWLICIVGALSLAFVFAR 60
           MS +  KIG++  T +   NMMGSGI +LP+ LA VG+ISI SWL+   G+ +LAF FA+
Sbjct: 1   MSKSNNKIGVVQLTILTIVNMMGSGIIMLPTQLAQVGTISILSWLVTAAGSTALAFAFAK 60

Query: 61  LATKNPQEGGPIAYAGEVSPVFG-FQTGVLYYHANWIGNLAIAITGVSYLSVFFPVLNNP 119
               + + GG   YA       G F     Y  +  I N+AIAI+ V Y +V F V  +P
Sbjct: 61  CGMFSKKSGGMGGYAEYAFGRSGNFMANYTYAVSLLIANVAIAISAVGYGAVLFDVELSP 120

Query: 120 IPAGLATIASVWLFTLVNLLGGSWVSRLCTIGLVLILIPVVGTALFGWTHFDSALYSQNW 179
           I   LATI  +WL T+ N  G     ++ +I +  I++PV+G +L GW  FD  LY   W
Sbjct: 121 IATCLATIGVLWLATVANFGGARITGQVSSITVWGIILPVIGVSLIGWFWFDFDLYKSAW 180

Query: 180 NVSAGSDGHAVITAVLICLWSFVGVESAAVSSGMVENPKRTVPLATMLGTGLAGLIYVLS 239
           N        A+  ++ + LW+F+G+ESA  +S  VENP++ VP+A M GT  A LIY++S
Sbjct: 181 NPHDLPFFEALGGSIAMTLWAFLGLESACANSEAVENPEKNVPIAVMGGTLGAALIYIVS 240

Query: 240 TQMISGMFPASEVAASGAPFALATTALFGSWTAPFVSAFTALACFTSLGSWMMLVGEAGK 299
           T +I+G+ P  E+A S APF LA   +F       V A   ++C  SL  W   + +  K
Sbjct: 241 TNVIAGIVPNGELALSNAPFGLAFAQMFNPTIGAIVMACAIISCTGSLLGWQFTIAQVFK 300

Query: 300 RAANDGNFPKVFGETDRNGVPKKGLLIASSMMTLLMLVLMFFSSETAHASDLFNQLTTDA 359
            +A++G FPK+F +  +   P  G+L   S+ ++L L+ +     +   +  F  L   A
Sbjct: 301 ASADEGFFPKLFSKVTKADAPVLGMLAIVSIQSVLSLMTI-----SPSLNKQFEALVNLA 355

Query: 360 VLLTMLPYFYS 370
           V+  ++PY  S
Sbjct: 356 VVTNIIPYILS 366