Pairwise Alignments

Query, 445 a.a., lysine:cadaverine antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., inner membrane protein YjeH (RefSeq) from Shewanella loihica PV-4

 Score = 97.1 bits (240), Expect = 1e-24
 Identities = 101/435 (23%), Positives = 185/435 (42%), Gaps = 30/435 (6%)

Query: 1   MSSNAKKIGLIACTGVVAGNMMGSGIALLPS-TLASVGSISIYSWLICIVGALSLAFVFA 59
           M  N   IG     G++A  ++G+G+ +LP  T+A+ GS ++ +W++  +  + +  VFA
Sbjct: 1   MEHNHGTIGRWQGAGLMATTLLGTGVFILPEMTIATAGSGALLAWILLTLAIIPVTLVFA 60

Query: 60  RLATKNPQEGGPIAYAGEV-SPVFGFQTGVLYYHANWIGNLAIAITGVSYLSVFFPVLNN 118
           RLA   P   GP  +  +      G  TG+++     IG  A  +    +++   P++  
Sbjct: 61  RLAGVFPHAAGPAYFVEKAFGRTAGRTTGLIFLLVVPIGTPAAILMTFQFINALVPLVGW 120

Query: 119 PIPAGLATIASVWLFTLVNLLGGSWVSRLCTIGLVLILIPVVGTALFGWTHF---DSALY 175
                L T  ++ L  L   L G  VS      L L ++ VV   LFG       D  L 
Sbjct: 121 Q---QLMTELALLLLLLALNLKGIQVSAKLQFALTLAIVSVV-VILFGAGGAKLGDLELA 176

Query: 176 SQNWNVSAGSDGHAVITAVLICLWSFVGVESAAVSSGMVENPKRTVPLATMLGTGLAGLI 235
           +      AGSD   V+ A  I  WSF+G+E+    +   + P + +  A ++GT L GL+
Sbjct: 177 APQ----AGSDMGLVMAAAGIAFWSFLGIEAMTHLANDFKRPDKDMLPAMIIGTILVGLV 232

Query: 236 YVLSTQMISGMFPASEVAASGAPFALATTALFGSWTAPFVSAFTALACFTSLGSWMMLVG 295
           YV  T ++    P  E    G     A   L G + A  +         +++  +   V 
Sbjct: 233 YVTCTLLLL-FVPKGE----GLAMVTAFDHLLGGYGAQVIGILGIAGGLSTVNVYTASVA 287

Query: 296 EAGKRAANDGNFPKVFGETDRNGVPKKGLLIASSMMTLLMLVLMFFSSETAHASDLFNQL 355
                 + +G  P+ F + +++ VP + L+     M  ++ +      E  H     N +
Sbjct: 288 RLIWSFSREGVLPRYFDKLNQHRVPVRALVAVLLTMATVICLTYLLGQELEHLIAWTNGV 347

Query: 356 TTDAVLLTMLPYFYSSINLIRFEGMTTRNTFVMLFSGIASLFCMVALAGAEGSTLTATFI 415
                L++ML    ++  L+      ++    ++  G+A  FC+        + L A  +
Sbjct: 348 FVLIYLVSML----AAARLL------SKRYLPLVIMGVA--FCLAMAVALGANMLYALML 395

Query: 416 MSLIILMFYSKKAGL 430
           +S++  + + +K  L
Sbjct: 396 VSVLAPLLWWQKTHL 410