Pairwise Alignments

Query, 445 a.a., lysine:cadaverine antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., APC family permease from Methanococcus maripaludis JJ

 Score = 86.7 bits (213), Expect = 1e-21
 Identities = 86/357 (24%), Positives = 156/357 (43%), Gaps = 43/357 (12%)

Query: 4   NAKKIGLIACTGVVAGNMMGSGIALLPSTLASV-GSISIYSWLICIVGALSLAFVFARLA 62
           ++KK+G    +G++ G ++GSGI ++P  +  +    SI++W+I +      A+  ++L 
Sbjct: 2   SSKKLGPYTLSGLIVGPILGSGIVIIPPIVYDILKDYSIFAWVIMMTIGGVFAYFASKLC 61

Query: 63  TKNPQEGGPIAYAGEVSPVFGFQTGVLYYHANW--------IGNLAIAITGVSYLSVFFP 114
            K P + G       ++ V G   G  Y + N         +  L + +    YLSV F 
Sbjct: 62  LKFPGDSG-------LTEVVGHSFGKSYKNLNAYYLLIAMAMAPLVVIMVAGEYLSVLFS 114

Query: 115 VLNNPIPAGLATIASVWLFTLVNLLGGSWVSR-LCTIGLVLILIP-VVGTALFGWTHFDS 172
             +           + +   ++ L+GG  +SR + ++G + +LI  V+ T L     F  
Sbjct: 115 NYS---------FGAEFYSAVLMLIGGIILSRNISSVGKISMLISTVISTILVVGGLFTI 165

Query: 173 ALYSQN-WNVSAGSDGHAVITAVLICLWSFVGVESAAVSSGMVENPKRTVPLATMLGTGL 231
             Y ++      G     V  + LI  WS +G E     S  VENP++T+P A ++    
Sbjct: 166 LFYRKDALFTGTGISTIDVGYSFLIMFWSIIGWEILGNYSLEVENPEKTIPKAALVSVIA 225

Query: 232 AGLIYVLSTQMISGMFPASEVAASG-----APFALATTALFGSWTAPFVSAFTALACFTS 286
             ++Y++    +SG     ++   G     +  +L    LFG +++  +S      C   
Sbjct: 226 MSIVYLI----VSGALQVLDIKKLGLIDPISGISLILYPLFGQYSSIILSLTITGLC--- 278

Query: 287 LGSWMMLVGEAGK---RAANDGNFPKVFGETDRNGVPKKGLLIASSMMTLLMLVLMF 340
           L S++ML+G A +     A DG FPK+F        P   +L+      L +  + F
Sbjct: 279 LCSFLMLIGGASRLVYAQAKDGVFPKIFKYRSNTNAPLSAVLLMVFANFLTLFAVYF 335