Pairwise Alignments

Query, 445 a.a., lysine:cadaverine antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., glutamate/gamma-aminobutyrate anti-porter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 84.3 bits (207), Expect = 9e-21
 Identities = 101/416 (24%), Positives = 172/416 (41%), Gaps = 39/416 (9%)

Query: 29  LPSTLASVGSISIYSWLICIVGALSLAFVFARLATK-NPQEGGPIAYAGEVSPVFGFQTG 87
           LP+      S + Y     IV  +  + V A LA     ++GG   + GE    +G + G
Sbjct: 29  LPAEAVYGMSSAFYYLFAAIVFLIPTSLVAAELAAMFQDKQGGVFRWVGEA---YGKKLG 85

Query: 88  VLYYHANWI------------GNLAIAITGVSYLSVFFPVLNNPIPAGLATIASVWLFTL 135
            L     WI            G ++IA  G++ +     + NN     +  +   WL T 
Sbjct: 86  FLAIWVQWIESTIWYPTVLTFGAVSIAFIGMNDVHDM-SLANNKYYTLVVVLIIYWLATF 144

Query: 136 VNLLGGSWVSRLCTIG---------LVLILIPVVGTALFGWTHFDSALYSQNWNVSAGSD 186
           ++L G SWV ++  IG          +LI++ ++  A  G ++ D   +S  +      D
Sbjct: 145 ISLKGMSWVGKVAKIGGMVGTIIPAALLIILGIIYLATGGQSNMD--FHSSFFPDFTNFD 202

Query: 187 GHAVITAVLICLWSFVGVESAAVSSGMVENPKRTVPLATMLGTGLAGLIYVLSTQMISGM 246
              V+ A  I L+ + G+E   +    VENP +  P A  +G  +  LI+VL T  +  +
Sbjct: 203 N--VVLAASIFLF-YAGMEMGGIHVKDVENPSKNYPKAVFIGALITVLIFVLGTFALGVI 259

Query: 247 FPASEVAASGA---PFALATTALFGSWTAPFVSAFTALACFTSLGSWMMLVGEAGKRAAN 303
            PA ++  + +    F      +  SW +P ++   A      + +W+    +       
Sbjct: 260 IPAKDINLTQSLLVGFDNYFRYIHASWLSPIIAIALAFGVLAGVLTWVAGPSKGIFAVGK 319

Query: 304 DGNFPKVFGETDRNGVPKKGLLIASSMMTLLMLVLMFFSSETAHASDLFNQLTTDAVLLT 363
            G  P  F +T++ GV K  L +    +T+L L+ +   S  +    + +QLT    L+ 
Sbjct: 320 AGYMPPFFQKTNKLGVQKNILFVQGIAVTVLSLLFVVMPSVQSF-YQILSQLTVILYLIM 378

Query: 364 MLPYFYSSINLIRFEGMTTRNTFVMLFSGIASLFCMVALAGAEGSTLTATFIMSLI 419
            L  F  +I L R++       F +  SG   L   +   G  GS L   FI+S I
Sbjct: 379 YLLMFSGAIAL-RYKMKKLNRPFRIGKSG-NGLMWFIGGLGFCGSLL--AFILSFI 430