Pairwise Alignments

Query, 445 a.a., lysine:cadaverine antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., inner membrane protein YjeH (RefSeq) from Shewanella sp. ANA-3

 Score = 88.6 bits (218), Expect = 3e-22
 Identities = 98/429 (22%), Positives = 182/429 (42%), Gaps = 33/429 (7%)

Query: 1   MSSNAKKIGLIACTGVVAGNMMGSGIALLPS-TLASVGSISIYSWLICIVGALSLAFVFA 59
           M+S++  IG     G++A  ++G+G+ +LP  T+    + ++ +W +  +  + +A +F 
Sbjct: 1   MNSHSGTIGRWQGAGLMATTLLGTGVFILPQMTIDKAQAGALIAWSLLTLAIIPVALIFG 60

Query: 60  RLATKNPQEGGPIAYAGEV-SPVFGFQTGVLYYHANWIGNLAIAITGVSYLSVFFPVLNN 118
           RLA+  P   GP  +  +      G   G+++     +G  A  +    +++   P+   
Sbjct: 61  RLASVFPHAAGPAYFVEKAFGRTAGRTIGLIFLLVVPMGAPAAILMTFQFVNALIPLDGW 120

Query: 119 PIPAGLATIASVWLFTLVNLLGGSWVSRLCTIGLVLILIPVVGTALFGWTHFDSALYSQN 178
           P   G   +    LF L   L G  VS     GL L ++ +V   LFG     ++     
Sbjct: 121 P-KVGAEVLVIFGLFLLN--LRGIQVSAKLQFGLTLCIVAIV-VLLFG-----ASSVQPG 171

Query: 179 WNVSAGSDGHAVITAVLIC----LWSFVGVESAAVSSGMVENPKRTVPLATMLGTGLAGL 234
              S  S G   I  ++I      WSF+G+E+    +     P++ +  A M+GT L G+
Sbjct: 172 HLTSLASYGTPEIPTIMIAAGIAFWSFLGIEAMTHLADDFRRPQQDMIPAMMMGTVLVGI 231

Query: 235 IYVLSTQMISGMFPASEVAASGAPFALATTALFGSWTAPFVSAFTALACFTSLGSWMMLV 294
           IYV  T +I  + P  +  A    F     AL G + A  +      +   ++  +    
Sbjct: 232 IYVACT-LILLLVPTDKSVAMIGVF----DALLGGYGAQVIGVLGIASGLATVNVYAASA 286

Query: 295 GEAGKRAANDGNFPKVFGETDRNGVPKKGLLIASSMMTLLMLVLMFFSSETAHASDLFNQ 354
                  +N+G  P+ F   +R+GVP + L    S+M  ++++      E  H     N 
Sbjct: 287 ARLIWSFSNEGILPRCFAVKNRHGVPIRALAALLSVMACVIVLTHTTGQELEHLIAWSNG 346

Query: 355 LTTDAVLLTMLPYFYSSINLIRFEGMTTRNTFVMLFSGIASLFCMVALAGAEGSTLTATF 414
           +     L+ ML    ++  L+       R+   ++  G    FC+ AL  A G+++    
Sbjct: 347 VFVVIYLMAML----AAAKLL------PRSNLPLVVLGCG--FCL-ALGIALGASMAYVL 393

Query: 415 IMSLIILMF 423
           ++ L +  F
Sbjct: 394 VLILFVAPF 402