Pairwise Alignments

Query, 90 a.a., DNA-binding protein HU-alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 90 a.a., DNA-binding protein HU-beta from Pseudomonas fluorescens FW300-N1B4

 Score =  101 bits (251), Expect = 2e-27
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 1  MNKTQLIDFIAEKADLTKVQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSARTG 60
          +NK++LID IA  AD+ K  A  AL+A + +V GALK GD V L+GFGTF V  R AR G
Sbjct: 1  VNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60

Query: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAI 89
          RNP+TG+ ++IAAA  P F AGKALK+A+
Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAV 89



 Score = 19.6 bits (39), Expect = 0.008
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 72 AAANVPAFVAGKALKDAIK 90
          A+A++P   AG+AL   I+
Sbjct: 12 ASADIPKAAAGRALDAVIE 30