Pairwise Alignments

Query, 90 a.a., DNA-binding protein HU-alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 90 a.a., DNA-binding protein HU-beta from Pseudomonas aeruginosa PA14

 Score =  111 bits (277), Expect = 2e-30
 Identities = 56/89 (62%), Positives = 68/89 (76%)

Query: 1  MNKTQLIDFIAEKADLTKVQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSARTG 60
          MNK++LID IA  AD+ K  A  AL+A + +V GALK GD V L+GFGTF V  R+ARTG
Sbjct: 1  MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60

Query: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAI 89
          RNP+TG+ IKIAAA +P F AGKALKDA+
Sbjct: 61 RNPQTGKPIKIAAAKIPGFKAGKALKDAV 89



 Score = 21.2 bits (43), Expect = 0.003
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 72 AAANVPAFVAGKALKDAIK 90
          A+A++P  VAG+AL   I+
Sbjct: 12 ASADIPKAVAGRALDAVIE 30