Pairwise Alignments

Query, 326 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., xylose repressor from Synechococcus elongatus PCC 7942

 Score = 99.4 bits (246), Expect = 1e-25
 Identities = 92/302 (30%), Positives = 134/302 (44%), Gaps = 25/302 (8%)

Query: 33  LIGLDIGGTKIEICVLDKQGSMLYRQRIATPDNYSQFVDCVCSLIVDAEQATQPVD---S 89
           +IG+D+GGT +++     +G    +Q +  P         V + +V+A +   P     +
Sbjct: 7   VIGVDLGGTAMKLGRYTIEGQC--QQELTVPTPTPSTPSNVRAALVEAIRQLDPQAEALA 64

Query: 90  IGIGLPGAVSPVTGLIKNA-NCTFLNGQDLSSDLQYRLGREVKLANDANCFALSEAIDGA 148
           IGIG PG       + + A N        L+  L+  L R V LANDANC  L E   G 
Sbjct: 65  IGIGTPGPADAAGRVARVAINLDGWTEVPLADWLEADLQRPVILANDANCAGLGEVWLGG 124

Query: 149 GKESMVVFGAILGTGCGGSIVVNRQVLVGPNAICGEWGHNPLPGYHLEQDGAARYCYCGR 208
           G+         LGTG GG+IV+N ++ VG      E G   L       D A  +C  G 
Sbjct: 125 GRGYRDAILLTLGTGVGGAIVLNGELFVGRTGTAAELGLITL-------DPAGPHCNSGN 177

Query: 209 QNCIERFISGSGFQDSYQALTGECITASEIMKRYKQQEPEAIHCYTQLIDHMARSFAGLV 268
           Q  +E++ S    Q  +           ++  R  Q +PEAI  +      +A   A LV
Sbjct: 178 QGSLEQYASIGAVQRRFGC------DPKDLGDRASQGDPEAIAAWQDYGRTLAAGLASLV 231

Query: 269 NVLDPDIIVLGGGLSNIDELYRDLPTATA---RHVFSDSAQ-VHFAKAVFGDSSGIRGAA 324
            VL P++I+LGGG+S     +  LP  T    R V   S + +  A A  G+ +G  GAA
Sbjct: 232 YVLTPEVIILGGGISGSAAFF--LPALTEELHRRVLPTSREDLQIAIAALGNEAGRVGAA 289

Query: 325 WL 326
            L
Sbjct: 290 KL 291