Pairwise Alignments

Query, 326 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., ROK family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  269 bits (687), Expect = 7e-77
 Identities = 133/301 (44%), Positives = 188/301 (62%), Gaps = 9/301 (2%)

Query: 34  IGLDIGGTKIEICVLDKQGSMLYRQRIATPDNYSQFVDCVCSLIVDAEQATQPVDSIGIG 93
           +G+D+GGTKIE+  L+ +G+ + R+RI TP +Y   ++ +  L+ +AE       S+G+G
Sbjct: 4   MGIDLGGTKIELVALNNEGNEVVRKRINTPRDYQGTLNAIVDLVNEAESTLGEKGSVGVG 63

Query: 94  LPGAVSPVTGLIKNANCTFLNGQDLSSDLQYRLGREVKLANDANCFALSEAIDGAGKESM 153
           +PG +SP +GL+KNAN T++NG  L   L   LGREV++ANDANCFALSEA+DGA     
Sbjct: 64  IPGVISPYSGLVKNANSTWINGHPLDVHLGELLGREVRVANDANCFALSEAVDGAAAGKS 123

Query: 154 VVFGAILGTGCGGSIVVNRQVLVGPNAICGEWGHNPLPGYHLEQDGAARYCYCGRQNCIE 213
           VVFG I+GTGCG  + +N +V  G N I GEWGHNPLP    E+    R C+CG  +CIE
Sbjct: 124 VVFGVIIGTGCGAGVAINGKVHAGGNGIGGEWGHNPLPWMTKEEFNTTR-CFCGNPDCIE 182

Query: 214 RFISGSGFQDSYQALTGECI--------TASEIMKRYKQQEPEAIHCYTQLIDHMARSFA 265
            FISG+GF   Y                + SEIM      +  A+  + + +D +ARS A
Sbjct: 183 TFISGTGFVRDYNEALSRAASVQRVPAKSGSEIMSLVDGGDEIALAAFERYVDRLARSLA 242

Query: 266 GLVNVLDPDIIVLGGGLSNIDELYRDLPTATARHVFSDSAQVHFAKAVFGDSSGIRGAAW 325
            ++N+LDPD IVLGGG+SN++ +Y  LP   + +V     +    + ++G SSG+RGAAW
Sbjct: 243 HVINLLDPDAIVLGGGMSNVEAIYPRLPALLSHYVVGRECRTPVVQNLYGCSSGVRGAAW 302

Query: 326 L 326
           L
Sbjct: 303 L 303