Pairwise Alignments

Query, 326 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., putative xylose repressor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 76.3 bits (186), Expect = 1e-18
 Identities = 75/320 (23%), Positives = 146/320 (45%), Gaps = 40/320 (12%)

Query: 34  IGLDIGGTKIEICVLDKQGSMLYRQRIATP---DNYSQFVDCVCSLIVDAEQAT----QP 86
           IG+DI    + I +++ +G M+   ++  P   +N  + ++ +C LI++  +      + 
Sbjct: 88  IGVDIKRFAVNIGLINFKGDMV-ELKMNIPYKFENSIEGMNELCKLILNFIKKLPINKEK 146

Query: 87  VDSIGIGLPGAVSPVTGLIKNANCTFLNGQDLSSDLQYRLGREVKLANDANCFALSEAID 146
           + +I + + G V+P +G   + +      + L+  L  +LG +V + ND       E + 
Sbjct: 147 ILNINVNVSGWVNPESGY--SFSQFNFEERPLADVLSEKLGHKVTIDNDTRAMTYGEYMQ 204

Query: 147 GAGKESMVVFGAILGTGCGGSIVVNRQVLVGPNAICGEWGHNPLPGYHLEQDGAARYCYC 206
           G  K    +    +  G G  I+++ +V  G +   GE+GH  +  Y  E       C+C
Sbjct: 205 GCVKGEKDIIFVNVSWGVGIGIIIDGKVYTGKSGFSGEFGH--VNAYDNE-----IICHC 257

Query: 207 GRQNCIERFISGSGFQDSY-------------QALTGE--CITASEIMKRYKQQEPEAIH 251
           G++ C+E   SGS                     ++GE   IT  EI+    +++   I 
Sbjct: 258 GKKGCLETEASGSALHRILLERIKSGESSILSTRISGEEDPITLDEIITAVNKEDLLCIE 317

Query: 252 CYTQLIDHMARSFAGLVNVLDPDIIVLGGGLS-NIDELYRDLPTATARH----VFSDSAQ 306
              ++   + +  AGL+N+ +P+++++GG LS   D + + + TA  ++    V  DSA 
Sbjct: 318 IVEEIGQKLGKQIAGLINIFNPELVIIGGTLSLTGDYITQPIKTAVRKYSLNLVNKDSAI 377

Query: 307 VHFAKAVFGDSSGIRGAAWL 326
           +    +   D +GI GA  L
Sbjct: 378 I---TSKLKDKAGIVGACML 394